YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC970.03
Organism:	Schizosaccharomyces pombe
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC970.03.

Description	E-value	Query Range	Subject Range
NCB5R_COCIM - NADH-cytochrome b5 reductase 1 OS=Coccidioides immitis GN=CBR1 PE=3 SV=1 NCB5R_COCIM - NADH-cytochrome b5 reductase 1 OS=Coccidioides immitis (strain RS) GN=CBR1 PE=3 SV=1 gi\|240107244 - gi\|240107244\|gb\|EER25429.1\| oxidoreductase, FAD-binding family protein [Coccidioides posadasii C735 ...	247.0	[0..11]	[301..10]
NCB5R_EMENI - NADH-cytochrome b5 reductase 1 OS=Emericella nidulans GN=cbr1 PE=3 SV=1 gi\|49098086, gi\|... - gi\|67540392\|ref\|XP_663970.1\| hypothetical protein AN6366.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	247.0	[0..11]	[301..12]
NCB5R_MAGGR - NADH-cytochrome b5 reductase 1 OS=Magnaporthe grisea GN=CBR1 PE=3 SV=1 NCB5R_MAGO7 - NADH-cytochrome b5 reductase 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=C...	241.0	[0..10]	[301..10]
gi\|71002114, gi\|... - gi\|71002114\|ref\|XP_755738.1\| NADH-cytochrome b5 reductase [Aspergillus fumigatus Af293], gi\|66853376...	241.0	[0..11]	[301..60]
NCB5R_ASPTN - NADH-cytochrome b5 reductase 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=cbr1 PE=3 SV...	231.0	[0..52]	[301..40]
gi\|169774333 - gi\|169774333\|ref\|XP_001821634.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769497 - gi\|83769497\|dbj\|BAE59632.1\| unnamed protein product [Aspergillus oryzae]	228.0	[0..46]	[301..3]
gi\|42554151, gi\|... - gi\|46125139\|ref\|XP_387123.1\| hypothetical protein FG06947.1 [Gibberella zeae PH-1], gi\|42554151\|gb\|E...	226.0	[0..9]	[301..14]
NCB5R_YARLI - NADH-cytochrome b5 reductase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CBR1 PE=3 SV=1 NCB5R_YARLI - NADH-cytochrome b5 reductase 1 OS=Yarrowia lipolytica GN=CBR1 PE=3 SV=1	223.0	[0..31]	[301..14]
NCB5R_USTMA - NADH-cytochrome b5 reductase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CBR1 PE=3 SV=1 NCB5R_USTMA - NADH-cytochrome b5 reductase 1 OS=Ustilago maydis GN=CBR1 PE=3 SV=1	223.0	[0..33]	[301..55]
gi\|207342632 - gi\|207342632\|gb\|EDZ70344.1\| YML125Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408123 - gi\|190408123\|gb\|EDV11388.1\| hypothetical protein SCRG_01775 [Saccharomyces cerevisiae RM11-1a] PGA3 - Putative cytochrome b5 reductase, localized to the plasma membrane; may be involved in regulation of... gi\|151946039 - gi\|151946039\|gb\|EDN64270.1\| processing of gas1p and alp [Saccharomyces cerevisiae YJM789] PGA3_YEAST - Plasma membrane-associated coenzyme Q6 reductase PGA3 OS=Saccharomyces cerevisiae (strain ATCC 20450...	223.0	[0..1]	[301..1]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQTLLSTP LHGVYIPVFL IIFGTYIVKR EWVGYAIVVA FSLGFHKFWR GRVRKVLSDK  60
   61 IQQFELSDKA VLNHNTAIYR FRLPRANDVL GLPIGQHLKV FVDVDGKEYS RSYTPLSSDA 120
  121 DKGYFDLLVK SYPNGKVSKK FSELKIGDTI GVRGPKGNWK HRTGLARHFG MIAGGTGITP 180
  181 MLQIIRAVLS NFEDPTEITL LYANVSEGDI VLRDEIDALA KKDPRFTVHY VLNNPPENWK 240
  241 GSVGFVTQEL IKAHFPAPSP ETKVLICGPT PMVNSLREAT VALGYEKSRA ISKLEDQVFV 300
  301 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2eixA
Description:	No description for 2eixA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits