YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC965.14c
Organism:	Schizosaccharomyces pombe
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC965.14c.

Description	E-value	Query Range	Subject Range
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	168.0	[0..5]	[162..26]
gi\|90438699, gi\|... - gi\|90579814\|ref\|ZP_01235622.1\| Putative cytosine/adenosine deaminase [Vibrio angustum S14], gi\|90438...	168.0	[0..1]	[162..1]
gi\|89051074, gi\|... - gi\|89073121\|ref\|ZP_01159660.1\| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34], gi\|...	167.0	[0..1]	[162..1]
gi\|77809323, gi\|... - gi\|77815675\|ref\|ZP_00814899.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella p...	167.0	[0..2]	[162..1]
gi\|86145643, gi\|... - gi\|86145643\|ref\|ZP_01063973.1\| Cytosine/adenosine deaminase [Vibrio sp. MED222], gi\|85836614\|gb\|EAQ5...	165.0	[0..5]	[162..23]
gi\|54307981, gi\|... - gi\|54307981\|ref\|YP_129001.1\| putative cytosine/adenosine deaminase [Photobacterium profundum SS9], g...	165.0	[0..1]	[162..1]
gi\|84376970, gi\|... - gi\|84388906\|ref\|ZP_00991114.1\| Cytosine/adenosine deaminase [Vibrio splendidus 12B01], gi\|84376970\|g...	165.0	[0..1]	[162..1]
gi\|71145999, gi\|... - gi\|71280259\|ref\|YP_270337.1\| cytidine/deoxycytidylate deaminase zinc-binding domain-containing prote...	164.0	[0..2]	[158..14]
gi\|126175184, gi... - gi\|68543670\|ref\|ZP_00583366.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella b...	164.0	[0..5]	[162..8]
gi\|78485955, gi\|... - gi\|78485955\|ref\|YP_391880.1\| cytidine/deoxycytidylate deaminase, zinc-binding region [Thiomicrospira...	164.0	[0..3]	[162..7]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTELSEKD LAYLREAIKV SQQARDEGQH PFGCIIVDEN DNVIMSAGNR VPDGDVTQHA  60
   61 ETRAVGLITK TRRDLEKCTL YTSTEPCAMC SGAIFWSGIR RMIFGLSNEN LIKLTQKSGE 120
  121 CPPLYINSRD ILGAASHPIE VVGPYIEDEA IIPHKGFWDG GR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1z3aA
Description:	Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytidine deaminase activity	4.42667374679603	bayes_pls_golite062009
deaminase activity	2.76997916054448	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.27736397496642	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.51294035758003	bayes_pls_golite062009
IMP cyclohydrolase activity	1.11605611485835	bayes_pls_golite062009
binding	0.895851674786081	bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity	0.827438033765078	bayes_pls_golite062009
hydrolase activity	0.339145951258927	bayes_pls_golite062009
cyclohydrolase activity	0.308525511259279	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	0.1546696349714	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: