YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9967704, gi\|1...
Organism:	Schizosaccharomyces pombe
Length:	903 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9967704, gi|1....

Description	E-value	Query Range	Subject Range
KS6A2_MOUSE - Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=1 SV=1 gi\|117616698 - gi\|117616698\|gb\|ABK42367.1\| Rsk 3 [synthetic construct]	482.0	[0..229]	[903..53]
gi\|109460771, gi... - gi\|62638557\|ref\|XP_341759.2\| PREDICTED: similar to Ribosomal protein S6 kinase alpha 2 (S6K-alpha 2)...	482.0	[0..229]	[903..53]
gi\|74006575 - gi\|74006575\|ref\|XP_858768.1\| PREDICTED: similar to ribosomal protein S6 kinase polypeptide 3 isoform...	478.0	[0..206]	[903..10]
gi\|50730201 - gi\|50730201\|ref\|XP_416804.1\| PREDICTED: similar to ribosomal protein S6 kinase 2 [Gallus gallus]	478.0	[0..63]	[903..312]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAKRLELC KEIQENEIEA LKAIFMDDFE ELKVRNAWNV TNGHVYCIHL CSRSANSKSI  60
   61 AKLDLCIELG RSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.09691
Match:	1djsA
Description:	Fibroblast growth factor receptor, FGFR
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [74-646]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYVKPVIKLQ NGENVLNSQI RFLLDKLDTK AKDLLGEEMI FELASIVQDY LNDWQSDLSS  60
   61 QFASLEEERA VQLKHDRERA EVDLQLRLKR EKDALFEEEQ TLQNKIQDEL QRRSYETPQS 120
  121 SSKKKTNSKE TTSLETLPTS IYFDCSISVR DCHDSLVTFN RVLPLYTISH SNLSTLTLVK 180
  181 PESKEISLQD CVFLLRTVRI STPYWSTEDG KREIQELEYE LESLKVIRHD LLASIYEYQL 240
  241 ERETRGYGWR LYVLQEYSPK FTLFSLLQTV LTLDVETVRA FSNNILEGLA ELHRLGISHK 300
  301 SLHLDNVVLF HSGHRTFAKL MDFGFTRTLR DMNASHPFNI NSQSITNILP EGLYPPEVSE 360
  361 SSFAAASRKT DIWCFGLLVL QMLCGAHVLN KFSSLKLIMT HVIPLLPGSY QDLVRRCLMR 420
  421 DSRKRPSAID LLSSHVIRLG TAVLPPVEQG TFSKSARPSY GGQQDGIIDL LYRKSVSRYE 480
  481 TDFEELEFLG RGGFGEVVKV KNRIDGRFYA VKKLVLLSDD KENSRILREV MTLSRLHHEH 540
  541 VVRYYTAWVE TEANDTVTEI ISSDSESLSQ SLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1omwA
Description:	G-protein coupled receptor kinase 2, N-terminal domain; G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1); G-protein coupled receptor kinase 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [647-903]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDFRQSSS LPADKLSSLD IHFEDDYNSS ADEEDPEASD ISFQYSNTSD KEGSSDKDSS  60
   61 IEEASSVKTQ ENGLNATLYI QMEYCEKLSL QDIIRDKIPV DEMWRLFRQI LEALAYIHSR 120
  121 GMMHRDLKPG NIFLDENRNV KLGDFGLATE NENYQDNNDK WKNRQSADED LTTGVGTALY 180
  181 VAPELLSRRN GVRYDAKVDM YSLGIILFEM CMTFSTSMER IRIIDTIRSP SISFPSTFPF 240
  241 SRASHEFKVI HCLLQHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1zy4A
Description:	Crystal Structure of eIF2alpha Protein Kinase GCN2: R794G Hyperactivating Mutant in Apo Form.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits