YRC Public Data Repository - Protein Structure Prediction

Protein:	med8
Organism:	Schizosaccharomyces pombe
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for med8.

Description	E-value	Query Range	Subject Range
MED8_ASHGO - Mediator of RNA polymerase II transcription subunit 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 10... MED8_ASHGO - Mediator of RNA polymerase II transcription subunit 8 OS=Ashbya gossypii GN=MED8 PE=3 SV=1	208.0	[0..11]	[198..25]
gi\|114555980 - gi\|114555980\|ref\|XP_001173530.1\| PREDICTED: mediator of RNA polymerase II transcription subunit MED8...	193.0	[0..6]	[152..4]
MED8_YEAST - Mediator of RNA polymerase II transcription subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 20450... MED8 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...	189.0	[0..10]	[200..30]
gi\|162859377, gi... - gi\|48762702\|ref\|NP_001001651.1\| mediator of RNA polymerase II transcription subunit MED8 isoform 3 [...	189.0	[0..6]	[152..4]
gi\|62649532, gi\|... - gi\|62649532\|ref\|XP_342895.2\| PREDICTED: similar to mediator of RNA polymerase II transcription subun...	189.0	[0..6]	[152..4]
MED8_MOUSE - Mediator of RNA polymerase II transcription subunit 8 OS=Mus musculus GN=Med8 PE=1 SV=1	188.0	[0..6]	[152..4]

Back

Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDISTEKTV ESLEAIRHRI AQIVQSLTHF LAILHQSESL SPWPTIHKNF NILLSQIHSL  60
   61 SNNLAAHSHT LQTTSIYPSL EFPVKEQEPL LTTLLRTKAL PEVEEWEANT LQEYEASISS 120
  121 QPKKKEANDA YQKDQLWDQA RIIFMEEREN YSWFDFVTRR QESEGEFVSQ RQLEIDRATE 180
  181 EQNANQMLTD ILSFMKSGKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits