YRC Public Data Repository - Protein Structure Prediction

Protein:	cnl2
Organism:	Schizosaccharomyces pombe
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cnl2.

Description	E-value	Query Range	Subject Range
gi\|49088620, gi\|... - gi\|67523041\|ref\|XP_659581.1\| hypothetical protein AN1977.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	203.0	[0..4]	[177..5]
gi\|39977661, gi\|... - gi\|39977661\|ref\|XP_370218.1\| hypothetical protein MG06715.4 [Magnaporthe grisea 70-15], gb\|EAA55058....	199.0	[0..4]	[172..5]
gi\|46123329, gi\|... - gi\|46123329\|ref\|XP_386218.1\| hypothetical protein FG06042.1 [Gibberella zeae PH-1], gi\|42551058\|gb\|E...	186.0	[0..4]	[172..5]
gi\|115391353, gi... - gi\|115391353\|ref\|XP_001213181.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	151.0	[0..4]	[186..5]
gi\|66849395, gi\|... - gi\|70993828\|ref\|XP_751761.1\| hypothetical protein Afu4g10650 [Aspergillus fumigatus Af293], gi\|66849... gi\|159125319 - gi\|159125319\|gb\|EDP50436.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	150.0	[0..4]	[177..5]
gi\|88176556, gi\|... - gi\|88176556\|gb\|EAQ84024.1\| hypothetical protein CHGG_10428 [Chaetomium globosum CBS 148.51], gi\|1162...	140.0	[0..4]	[172..5]
gi\|85110784 - gi\|85110784\|ref\|XP_963630.1\| hypothetical protein NCU06789 [Neurospora crassa OR74A] gi\|28925316, gi\|... - gi\|32413190\|ref\|XP_327075.1\| predicted protein [Neurospora crassa], gi\|28925316\|gb\|EAA34394.1\| predi...	135.0	[0..4]	[101..59]
gi\|169771545 - gi\|169771545\|ref\|XP_001820242.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768101 - gi\|83768101\|dbj\|BAE58240.1\| unnamed protein product [Aspergillus oryzae]	134.0	[0..4]	[145..5]
gi\|90306484, gi\|... - gi\|90306484\|gb\|EAS36115.1\| hypothetical protein CIMG_01469 [Coccidioides immitis RS], gi\|119194189\|r...	117.0	[0..18]	[185..15]
gi\|111055898 - gi\|111055898\|gb\|EAT77018.1\| hypothetical protein SNOG_15643 [Phaeosphaeria nodorum SN15]	94.0	[0..4]	[178..5]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMEEQILND YLLSQGRLQS IISLEQWRQL FPQRYREDPL IERLYEYCTQ QRQKRLAKLR  60
   61 ANIHLESQVI GKSRIDRMLA TNVEKLQTVS HASTLHDVEE FYTSHS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.552842
Match:	PF09447.1
Description:	No description for PF09447.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKPLDISEIN ERLSEAVQSA YTKLNEEKER CTQLTLKMNS QIASLSDFQW SKEPNVDESI  60
   61 HLVESLIESL EKAAPSAIEE LD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits