YRC Public Data Repository - Protein Structure Prediction

Protein:	fbh1
Organism:	Schizosaccharomyces pombe
Length:	878 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbh1.

Description	E-value	Query Range	Subject Range
gi\|7492645 - gi\|7492645\|pir\|\|T40239 probable helicase - fission yeast (Schizosaccharomyces pombe)	603.0	[0..1]	[878..1]
gi\|63054772 - gi\|63054772\|ref\|NP_596121.2\| hypothetical protein SPBC336.01 [Schizosaccharomyces pombe 972h-]	597.0	[0..25]	[878..1]
gi\|116101060, gi... - gi\|116627783\|ref\|YP_820402.1\| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9], gi\|...	372.0	[0..268]	[871..3]
gi\|68195065, gi\|... - gi\|69246832\|ref\|ZP_00604141.1\| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO], gi\|6819506... gi\|48824856 - ref\|ZP_00286185.1\| COG0210: Superfamily I DNA and RNA helicases [Enterococcus faecium]	370.0	[0..268]	[871..6]
gi\|55737004 - gb\|AAV60646.1\| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi\|55821019, gi\|... - gi\|55821019\|ref\|YP_139461.1\| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311], gi\|5...	368.0	[0..268]	[871..9]
gi\|55738924 - gb\|AAV62565.1\| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] gi\|55822939, gi\|... - gi\|55822939\|ref\|YP_141380.1\| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066], gi\|55...	368.0	[0..268]	[871..9]
gi\|78610808, gi\|... - gi\|81429165\|ref\|YP_396166.1\| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K], gi\|7...	368.0	[0..265]	[871..2]
gi\|116076290, gi... - gi\|116515714\|ref\|YP_816449.1\| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39], gi\|116... gi\|25290772 - pir\|\|C97996 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Streptococcus pneumoniae (strain R6... gi\|15458610, gi\|... - gi\|15903039\|ref\|NP_358589.1\| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6], gi\|15458...	368.0	[0..269]	[871..4]
gi\|19746195, gi\|... - gi\|19748377\|gb\|AAL97830.1\| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232], gi...	367.0	[0..268]	[871..3]
gi\|111657604, gi... - gi\|15900955\|ref\|NP_345559.1\| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4], gi\|14... gi\|25290765 - pir\|\|F95125 ATP-dependent DNA helicase PcrA [imported] - Streptococcus pneumoniae (strain TIGR4)	366.0	[0..269]	[871..4]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQHLHSCK FYRLPLEIIP LICRFLSVQD IQSFIRVFPS FQTILDSSND LFWKKKNYEL  60
   61 RIRRNRLLRG SYAAGVSSSA MNGFVNGTQI SSTPAEREYY SKSDEIKNIC GLPPGPMKVE 120
  121 QIGHAIDHLV SETHTVDHLG SSIKASFFHI D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-799]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVPLEWISSI CMQVQSFFSP AAREAISSLK SRTTTSNLLL SLFVGILFED DLWYFFNTLY  60
   61 MLSSTSAIEF AYFLDSIFTV VRTDYEHYRD PLSQTLITSC TRIHNIVAVI ESPYDEPNTK 120
  121 GLTSEQKMIV ECQLNPGEVL KVKAFAGTGK TKALLEFAKS RPKDKILYVA FNKAAKEDAE 180
  181 LRFPFNVKCS TMHGLAYGAI LAQADLPQAK LERQLSNSTI ASLLSLQVAF PKANRKNNPG 240
  241 TPSASLVASH IMFTLNRFMH STDWQLGFRH ISKRSLEVTK LSKEKLLAYT KKLWSLIVNF 300
  301 EYTHAPLIPD AYMKLLHLYE FPNIFSKYDY ILFDEAQDFT PCMVDLIYRQ KHARIVIVGD 360
  361 AHQCIYGFRG ANACAFNENL YPSTKQLCLT KSFRFGNSVA KYANFLLSLK GENVKLKGVQ 420
  421 NDHAYWSSAS NPNNVSGAFR FFPHTIIFRT NKELILQSIR LSVSLPKEIP IAILGSMRKK 480
  481 AFQLLRSGSE LAHGQRPSHP KLKDFSSWGE FEVHVKNSAE EDAELALVYD MADELFSESF 540
  541 LSRLDNCEKR LMDSKDDGDN GIILATAHQS KGLEWDNVQL GNDFRPKFDS VSFSRIGSSR 600
  601 YLQEEINILY VALTRAKKRL ILNDTITKLY ALECGLVRFA GGILTEDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	2gjkA
Description:	No description for 2gjkA was found.

Predicted Domain #3

Region A:
Residues: [800-878]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQPGKVALFV DWQIDKFSFF YETPAEGYNL LVEANEKSVW DIFFGVLSGA WQNYIANTSE  60
   61 RLKRSMLFIE NQLFAVHDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.522879
Match:	1pjrA
Description:	STRUCTURE OF DNA HELICASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits