YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC737.07c
Organism:	Schizosaccharomyces pombe
Length:	660 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC737.07c.

Description	E-value	Query Range	Subject Range
UPF1 - UPF1 regulator of nonsense transcripts homolog (yeast)	383.0	[0..1]	[659..285]
gi\|47216421 - gi\|47216421\|emb\|CAG01972.1\| unnamed protein product [Tetraodon nigroviridis]	382.0	[0..1]	[659..264]
gi\|76620868 - gi\|76620868\|ref\|XP_612154.2\| PREDICTED: similar to regulator of nonsense transcripts 1 [Bos taurus]	382.0	[0..1]	[659..283]
gi\|73986070 - gi\|73986070\|ref\|XP_533868.2\| PREDICTED: similar to regulator of nonsense transcripts 1 [Canis famili...	382.0	[0..1]	[659..286]
gi\|50761112 - gi\|50761112\|ref\|XP_418237.1\| PREDICTED: similar to regulator of nonsense transcripts 1; up-frameshif...	382.0	[0..1]	[659..306]
gi\|148223321, gi... - gi\|49116641\|gb\|AAH73441.1\| MGC80941 protein [Xenopus laevis], gi\|148223321\|ref\|NP_001085862.1\| MGC80...	382.0	[0..1]	[659..264]
RENT1_MOUSE - Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2	380.0	[0..1]	[659..280]

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Predicted Domain #1

Region A:
Residues: [1-660]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNEQICL DEDWIQKFGD REIEFVDEAQ KSEVDETEKS IKRFPLSVLQ RKGLALINLR  60
   61 IGVVKTGFGG KTIIDFEKDP AFSNGEELPA NSFSPGDVVS IRQDFQSSKK KRPNETDISV 120
  121 EGVVTRVHER HISVALKSEE DIPSSVTRLS VVKLVNRVTY ERMRHTMLEF KRSIPEYRNS 180
  181 LFYTLIGRKK ADVSIDQKLI GDIKYFNKEL NASQKKAVKF SIAVKELSLI HGPPGTGKTH 240
  241 TLVEIIQQLV LRNKRILVCG ASNLAVDNIV DRLSSSGIPM VRLGHPARLL PSILDHSLDV 300
  301 LSRTGDNGDV IRGISEDIDV CLSKITKTKN GRERREIYKN IRELRKDYRK YEAKTVANIV 360
  361 SASKVVFCTL HGAGSRQLKG QRFDAVIIDE ASQALEPQCW IPLLGMNKVI LAGDHMQLSP 420
  421 NVQSKRPYIS MFERLVKSQG DLVKCFLNIQ YRMHELISKF PSDTFYDSKL VPAEEVKKRL 480
  481 LMDLENVEET ELTDSPIYFY DTLGNYQEDD RSEDMQNFYQ DSKSNHWEAQ IVSYHISGLL 540
  541 EAGLEAKDIA VVTPYNAQVA LIRQLLKEKG IEVEMGSVDK VQGREKEAII FSLVRSNDVR 600
  601 EVGFLAEKRR LNVAITRPKR HLCVIGDSNT VKWASEFFHQ WVDFLEENAI VMDIDATMFE 660
  661

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2gjkA
Description:	No description for 2gjkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits