YRC Public Data Repository - Protein Structure Prediction

Protein:	txl1
Organism:	Schizosaccharomyces pombe
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for txl1.

Description	E-value	Query Range	Subject Range
gi\|88185402, gi\|... - gi\|88185402\|gb\|EAQ92870.1\| hypothetical protein CHGG_01105 [Chaetomium globosum CBS 148.51], gi\|1161...	207.0	[0..1]	[288..1]
gi\|125979663\|ref... - GA18927-PA [Drosophila pseudoobscura], GA18927 [Drosophila pseudoobscura pseudoobscura] gi\|54640848, gi\|... - gi\|54640848\|gb\|EAL29599.1\| GA18927 [Drosophila pseudoobscura pseudoobscura], gi\|125979663\|ref\|XP_001... gi\|194115482, gi... - gi\|195174072\|ref\|XP_002027806.1\| GL16306 [Drosophila persimilis], gi\|194115482\|gb\|EDW37525.1\| GL1630...	206.0	[0..1]	[289..1]
gi\|187027605, gi... - gi\|39598299\|emb\|CAE68992.1\| Hypothetical protein CBG14979 [Caenorhabditis briggsae], gi\|187027605\|em... gi\|157745561 - gi\|157745561\|ref\|XP_001667877.1\| Hypothetical protein CBG14979 [Caenorhabditis briggsae AF16]	203.0	[0..1]	[289..1]
gi\|70994138, gi\|... - gi\|70994138\|ref\|XP_751916.1\| thioredoxin [Aspergillus fumigatus Af293], gi\|66849550\|gb\|EAL89878.1\| t... gi\|159125169 - gi\|159125169\|gb\|EDP50286.1\| thioredoxin, putative [Aspergillus fumigatus A1163]	203.0	[0..1]	[288..1]
gi\|114670980 - gi\|114670980\|ref\|XP_001164327.1\| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...	202.0	[0..4]	[286..26]
Txl-PA - The gene Thioredoxin-like is referred to in FlyBase by the symbol Dmel\Txl (CG5495, FBgn0035631). It...	201.0	[0..1]	[289..1]
gi\|108875726, gi... - gi\|157118424\|ref\|XP_001659108.1\| hypothetical protein AaeL_AAEL008291 [Aedes aegypti], gi\|108875726\|...	200.0	[0..1]	[289..1]
CE24447 - thioredoxin-like protein status:Confirmed UniProt:Q9N2K6 protein_id:AAF60759.1	199.0	[0..1]	[289..1]
gi\|49087750, gi\|... - gi\|67522364\|ref\|XP_659243.1\| hypothetical protein AN1639.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	199.0	[0..4]	[288..5]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIEIRSYQ HWISTIPKSG YLAVDCYADW CGPCKAISPL FSQLASKYAS PKFVFAKVNV  60
   61 DEQRQIASGL GVKAMPTFVF FENGKQIDML TGANPQALKE KVALISSKAT GTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2j23A
Description:	No description for 2j23A was found.

Predicted Domain #2

Region A:
Residues: [114-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALASSSSAPV KGFASLQGCI ENPQLECLNQ QDDHDLKSAF NSNPSSFLES DVDEQLMIYI  60
   61 PFLEVVKVHS IAITPVKGET SSAPKTIKLY INQPNNLSFE DAESFTPTQV IEDIVYEQDD 120
  121 QPTIIPLRFV KFQRVNSLVI FIYSNVGEEE TTKISRLELF GEPVGDSSKG KLQKVEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1wwyA
Description:	Solution structure of the DUF1000 domain of a thioredoxin-like protein 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits