YRC Public Data Repository - Protein Structure Prediction

Protein:	mug66
Organism:	Schizosaccharomyces pombe
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug66.

Description	E-value	Query Range	Subject Range
AT101_ARATH - Autophagy-related protein 101 OS=Arabidopsis thaliana GN=ATG101 PE=1 SV=1	213.0	[0..8]	[166..10]
gi\|40745235, gi\|... - gi\|67523649\|ref\|XP_659884.1\| hypothetical protein AN2280.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	213.0	[0..7]	[168..12]
gi\|238503538, gi... - gi\|238503538\|ref\|XP_002383002.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169765163 - gi\|169765163\|ref\|XP_001817053.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764907 - gi\|83764907\|dbj\|BAE55051.1\| unnamed protein product [Aspergillus oryzae]	211.0	[0..7]	[168..12]
gi\|114188838, gi... - gi\|115438268\|ref\|XP_001218023.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	208.0	[0..7]	[168..12]
gi\|90300873, gi\|... - gi\|90300873\|gb\|EAS30504.1\| hypothetical protein CIMG_05983 [Coccidioides immitis RS], gi\|119181809\|r...	206.0	[0..7]	[172..11]
gi\|85109042 - gi\|85109042\|ref\|XP_962719.1\| hypothetical protein NCU06174 [Neurospora crassa OR74A] gi\|32411097, gi\|... - gi\|32411097\|ref\|XP_326029.1\| hypothetical protein [Neurospora crassa], gi\|28924334\|gb\|EAA33483.1\| co...	199.0	[0..6]	[163..9]
gi\|66851638, gi\|... - gi\|70998560\|ref\|XP_754002.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668516... gi\|159126262 - gi\|159126262\|gb\|EDP51378.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	194.0	[0..22]	[168..43]
gi\|109096739, gi... - gi\|109096739\|ref\|XP_001091708.1\| PREDICTED: similar to CG7053-PA isoform 3 [Macaca mulatta], gi\|1090... C12orf44 - chromosome 12 open reading frame 44 gi\|114644601, gi... - gi\|114644609\|ref\|XP_001144690.1\| PREDICTED: similar to Chromosome 12 open reading frame 44 isoform 4... tr\|M3WZ79\|M3WZ79... - Autophagy related 101 OS=Felis catus GN=ATG101 PE=4 SV=1	191.0	[0..7]	[152..8]
ATGA1_RAT - Autophagy-related protein 101 OS=Rattus norvegicus GN=Atg101 PE=2 SV=1	190.0	[0..7]	[152..8]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTVTIELK IGYKYAAEVV KAVLGVILFH RQFSTVPART IDVLDITVPT LVGAELNEQL  60
   61 ATKAAEFIDT IRNEAGANGQ MILLLYERSP KKSWFGKGNT IPWEQWILHT TILEEGDSYQ 120
  121 ESSLSLEAAV EQIVQAVNLR SLSYLPPVAM DSGNYPYEIV TPTSTEGWGS LLKRMIIENV 180
  181 SGGD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	1s2hA
Description:	The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.69378184514375	bayes_pls_golite062009
protein binding	0.841515803184277	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: