YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC776.05
Organism:	Schizosaccharomyces pombe
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC776.05.

Description	E-value	Query Range	Subject Range
gi\|85102875 - gi\|85102875\|ref\|XP_961410.1\| hypothetical protein NCU01324 [Neurospora crassa OR74A] gi\|32412674, gi\|... - gi\|32412674\|ref\|XP_326817.1\| hypothetical protein ( (AL451017) conserved hypothetical protein [Neuro...	560.0	[0..30]	[397..92]
gi\|39978017, gi\|... - gi\|39978017\|ref\|XP_370396.1\| hypothetical protein MGG_06893 [Magnaporthe grisea 70-15], gb\|EAA55236....	560.0	[0..30]	[402..97]
gi\|49091232, gi\|... - gi\|67524965\|ref\|XP_660544.1\| hypothetical protein AN2940.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	553.0	[0..30]	[397..68]
gi\|116206610, gi... - gi\|88183195\|gb\|EAQ90663.1\| hypothetical protein CHGG_02598 [Chaetomium globosum CBS 148.51], gi\|1162...	553.0	[0..30]	[397..87]
gi\|46110054, gi\|... - gi\|46110054\|ref\|XP_382085.1\| hypothetical protein FG01909.1 [Gibberella zeae PH-1], gi\|42545824\|gb\|E...	552.0	[0..30]	[397..80]
gi\|115384928, gi... - gi\|115384928\|ref\|XP_001209011.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	531.0	[0..17]	[401..81]
gi\|169767816 - gi\|169767816\|ref\|XP_001818379.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766234 - gi\|83766234\|dbj\|BAE56377.1\| unnamed protein product [Aspergillus oryzae] gi\|238484727, gi... - gi\|238484727\|ref\|XP_002373602.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22...	523.0	[0..30]	[401..62]
gi\|66852427, gi\|... - gi\|71000146\|ref\|XP_754790.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668524... gi\|159127799 - gi\|159127799\|gb\|EDP52914.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	518.0	[0..30]	[401..110]
gi\|119177296, gi... - gi\|90299226\|gb\|EAS28857.1\| hypothetical protein CIMG_07603 [Coccidioides immitis RS], gi\|119177296\|r...	517.0	[0..30]	[397..73]
gi\|111071104 - gi\|111071104\|gb\|EAT92224.1\| hypothetical protein SNOG_00729 [Phaeosphaeria nodorum SN15]	515.0	[0..30]	[399..115]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHLEFDENT DSEYSIFEED NDYGLHGLDD SVGFTDLFDA PNIYRVYSWL HKHYNQKKGQ  60
   61 LKHGVSRQKN KLQPIHKQIN YETDKLKERL GKSIDKFQEQ WNSGKVVRFR DKLSFALGVS 120
  121 TCILTALLVG MAPESMHLWY TIQLFVYLPL RYYTYQRKGY EYFIADFCYW GNILLLVYIW 180
  181 IFPE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.430	a.118.8	TPR-like
View	Download	0.382	a.11.2	Second domain of FERM
View	Download	0.349	a.11.2	Second domain of FERM
View	Download	0.305	c.20.1	Initiation factor IF2/eIF5b, domain 3
View	Download	0.297	a.7.6	Ribosomal protein S20

Predicted Domain #2

Region A:
Residues: [185-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRRLFILSYS ISYGTLAWSV VAWRNSLLFH SIDKITSLFI HFFPPLVLHT IVHLTNKSYL  60
   61 KDRFPAVLKV KKIDLLSSVE IASFFYALWQ IWYYFFIQVG KQKQIQEGRP TSFTWLSKAS 120
  121 YSKTKLGRAV AKLPQNLQPF VFMIIQYLYS ITTMLPCSLW YNNKLYSTAF LALIFGWSVW 180
  181 NGASYYIDVF GRRFQKELEA LRQQLAETPT NSGSSSALSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits