| Protein: | SPBC1E8.02 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 603 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1E8.02.
| Description | E-value | Query Range |
Subject Range |
|
|
183.0 | [0..4] | [416..107] |
|
|
179.0 | [0..4] | [416..28] |
|
|
177.0 | [0..4] | [416..28] |
|
|
175.0 | [0..4] | [416..37] |
|
|
172.0 | [0..4] | [416..37] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MSEYRIRVTT VDQKVGIFQV PRTKTVLELK ELIAVTFEAP ADRLKLIHAG RVLRNETPLE 60
61 EILHDATDLV TFHLVIAVFN STSTTLPSAT SSSVPQSRTS ELSSTNSIPT PRITSLNPEE 120
121 LSRRERAQRL LQTYNSFHGS GLGGLFPNIH RELESHGFSL PTHEQSSPVA ESLDNSVSSA 180
181 LSPHLETLRR RNLSIHHQHI QAHEMAQESL ETRNPGNISS SSAPLASDQS PTVSSNHIHA 240
241 SGNLALGSNS GLNPRSPNSF SSPLDNPALH TVDSTNVNGS LS
|
| Detection Method: |  |
| Confidence: | 21.154902 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [283-381] |
1 11 21 31 41 51
| | | | | |
1 PLSNSSSINQ VHQNETHGST ISVPNPNLSQ MGPSHSSSVP SNLSPNPAQN ENPSTTSIPS 60
61 INNQPFPSGL SASNSNFASS SFIPQSVPQL LPIYYQTIF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [382-449] |
1 11 21 31 41 51
| | | | | |
1 YNGNYYLQQL PSASPPTMFR DHSFAPLVSP SIVSPYGVLE NEETGECAFL FSPNASQPHF 60
61 QPRAPTFG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.698 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.629 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.629 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.549 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.532 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.470 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.409 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.396 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.392 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
|
Region A: Residues: [450-603] |
1 11 21 31 41 51
| | | | | |
1 IPRNVRSLFT LPFFHTIRNI ERHFRLFIRL ALFCVLTTYN VSLSQTILLT SIMSVVFLLQ 60
61 TGALAPFIND NPLIQSGMRH IRNLQDEYRR RRNRTAQRVV EIPNETQTED EQDGTNTPDN 120
121 RADAEERELT RSQRIYRTVV RTIVAFALSF VPRA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
