YRC Public Data Repository - Protein Structure Prediction

Protein:	ibp1
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ibp1.

Description	E-value	Query Range	Subject Range
gi\|73991402 - gi\|73991402\|ref\|XP_860747.1\| PREDICTED: similar to cell division cycle 25B isoform 3 isoform 4 [Cani...	99.0	[0..3]	[138..382]
gi\|18643258 - gi\|18643258\|gb\|AAL76260.1\|AF466828_1 dual-specificity phosphatase Cdc25 [Asterina pectinifera]	99.0	[0..3]	[138..138]
gi\|248473 - gi\|248473\|gb\|AAB22026.1\| Cdc25M2 [Mus sp.] MPIP2_MOUSE - M-phase inducer phosphatase 2 OS=Mus musculus GN=Cdc25b PE=1 SV=1	99.0	[0..3]	[138..407]
gi\|7435156 - gi\|7435156\|pir\|\|I66868 cdc25B - rat MPIP2_RAT - M-phase inducer phosphatase 2 OS=Rattus norvegicus GN=Cdc25b PE=1 SV=1	98.0	[0..3]	[138..405]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLSYVSPD ALKGWLMESP NEISIIDVRD YDYEGERIPG SVRIPSDTFL ASVDQHVDDL  60
   61 MKKRSLIVHC TYSQVRGPKA ARVLSEILRN RITESKEKLS LSQKEKLFQN LPTVYILHGG 120
  121 FSAWKRRYGG QQGLIEYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1ym9A
Description:	Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits