YRC Public Data Repository - Protein Structure Prediction

Protein:	mrp7
Organism:	Schizosaccharomyces pombe
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp7.

Description	E-value	Query Range	Subject Range
gi\|496715 - gi\|496715\|emb\|CAA54379.1\| unnamed protein product [Saccharomyces cerevisiae]	176.0	[0..11]	[151..3]
gi\|40739804, gi\|... - gi\|67902538\|ref\|XP_681525.1\| hypothetical protein AN8256.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	171.0	[0..14]	[151..75]
gi\|77023080, gi\|... - gi\|77023080\|ref\|XP_888984.1\| hypothetical protein CaO19_7203 [Candida albicans SC5314], gi\|68481766\|... gi\|76573797 - gi\|76573797\|dbj\|BAE44881.1\| hypothetical protein [Candida albicans]	166.0	[0..18]	[151..12]
RM02_KLULA - 60S ribosomal protein L2, mitochondrial OS=Kluyveromyces lactis GN=MRPL2 PE=3 SV=2 RM02_KLULA - 54S ribosomal protein L2, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7...	165.0	[0..31]	[153..14]
gi\|1022902 - gi\|1022902\|gb\|AAA79723.1\| 50S subunit ribosomal protein [Kluyveromyces lactis]	164.0	[0..31]	[153..14]
RM02_DEBHA - 60S ribosomal protein L2, mitochondrial OS=Debaryomyces hansenii GN=MRPL2 PE=3 SV=1 RM02_DEBHA - 54S ribosomal protein L2, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM ...	161.0	[0..5]	[151..8]
RM02_ASHGO - 60S ribosomal protein L2, mitochondrial OS=Ashbya gossypii GN=MRPL2 PE=3 SV=1 RM02_ASHGO - 54S ribosomal protein L2, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 99...	160.0	[0..24]	[151..14]
RK27_ORYSA - 50S ribosomal protein L27, chloroplast precursor (CL27) - Oryza sativa (Rice) RK27_ORYSJ - 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1	156.0	[0..28]	[151..52]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINQGLFIRV NNFQLLKASL AYKKASNILT FPPIRTSTKH GGGSSKNTGD SAGRRLGIKR  60
   61 SENQFVRAGE ILIRQRGTKF HPGDNTGLGK DHTIYSLVSG YVKFFQMDVS LRKRRKYVGV 120
  121 VFDKETTLPR PKDEPTIRRV NKYITSANSA QVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1vs6W
Description:	No description for 1vs6W was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
peptidyltransferase activity	4.12480250064405	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.660696125848255	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: