YRC Public Data Repository - Protein Structure Prediction

Protein:	yth1
Organism:	Schizosaccharomyces pombe
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yth1.

Description	E-value	Query Range	Subject Range
YTH1_GIBZE - mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae GN=YTH1 PE=3 SV=1 YTH1_GIBZE - mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NR...	127.0	[0..1]	[169..157]
gi\|109117558 - gi\|109117558\|ref\|XP_001086803.1\| PREDICTED: similar to Cleavage and polyadenylation specificity fact...	125.0	[0..35]	[169..197]
gi\|113427563 - gi\|113427563\|ref\|XP_945726.2\| PREDICTED: similar to Cleavage and polyadenylation specificity factor,...	120.0	[0..20]	[169..82]
gi\|114614821 - gi\|114614821\|ref\|XP_001137283.1\| PREDICTED: cleavage and polyadenylation specific factor 4, 30kD sub...	118.0	[0..38]	[165..51]
gi\|73957938 - gi\|73957938\|ref\|XP_860761.1\| PREDICTED: similar to Cleavage and polyadenylation specificity factor, ...	117.0	[0..38]	[165..51]
CPSF4_XENLA - Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1	117.0	[0..38]	[167..51]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDYIKDKAI AADFSSVQFR FDNYLKQNFN FGRSALLNSG NGRDSGSKMG SVVCKHWLRG  60
   61 LCKKGEQCDF LHEYNLKKMP PCHFYAERGW CSNGEECLYL HLDP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	2d9nA
Description:	No description for 2d9nA was found.

Predicted Domain #2

Region A:
Residues: [105-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKQVGVCAWY NMGFCPLGPI CRGKHVRKPR PCPKYLAGFC PLGPNCPDAH PKHSEPPHPP  60
   61 QKRKDW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.4
Match:	2cqeA
Description:	Solution Structure of the Zinc-finger domain in KIAA1064 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits