YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk15
Organism:	Schizosaccharomyces pombe
Length:	534 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk15.

Description	E-value	Query Range	Subject Range
gi\|2315983 - gi\|2315983\|gb\|AAB70706.1\| calmodulin-like domain protein kinase [Tortula ruralis]	267.0	[0..42]	[454..24]
gi\|125545976 - gi\|125545976\|gb\|EAY92115.1\| hypothetical protein OsI_13822 [Oryza sativa Indica Group] gi\|115455805, gi... - gi\|50355719\|gb\|AAT75244.1\| putative calcium-dependent protein kinase [Oryza sativa (japonica cultiva...	267.0	[0..32]	[453..35]
CDPKK_ARATH - Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=3 SV=1	264.0	[0..13]	[454..17]
gi\|92874033, gi\|... - gi\|92874033\|gb\|ABE82358.1\| EPS15 homology (EH); Protein kinase [Medicago truncatula], gi\|92867373\|gb...	262.0	[0..79]	[472..17]
gi\|20453015 - gi\|20453015\|gb\|AAL68972.1\| calmodulin-like-domain protein kinase CPK2 [Cucurbita maxima]	261.0	[0..42]	[472..6]
gi\|53988148 - gi\|53988148\|gb\|AAV28169.1\| calcium-dependent protein kinase 1 [Vicia faba]	261.0	[0..122]	[472..19]
gi\|3320104, gi\|1... - pir\|\|T02784 calcium-dependent protein kinase (EC 2.7.1.-) - maize (strain W64A), gi\|3320104\|emb\|CAA...	261.0	[0..25]	[453..48]
gi\|15289758 - gi\|15289758\|dbj\|BAB63463.1\| calcium dependent protein kinase [Solanum tuberosum]	260.0	[0..26]	[472..8]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDSPILPL SNNPPAARTH DHSQRNNHAR HVSSSGTTLF APVKPATKKY NYRRVSPHGS  60
   61 YISPLEAMTV KLADTYSICN PKFQFSSEQN PRRPLTKPSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2fo0A
Description:	No description for 2fo0A was found.

Predicted Domain #2

Region A:
Residues: [101-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVHNHGFDNV NHDYVLYVND LLGTDEGRKY LILDTLGHGT FGQVARCQDL KTQQIVAIKV  60
   61 IKNKPAFYNQ CVMEVSILEL LNNKYDPEDK RHLIRLYDQF MHKNHLCLVF ELLSINLYEL 120
  121 IKQNQFRGLH LSLVRSFATQ LLSCTSLLKQ ARIIHCDLKP ENILLQDLSS PIVKVIDFGS 180
  181 ACHERQTVYT YIQSRFYRSP EVILGLHYNC GIDMWSLGCI LAELFLGLPL FPGNSEYNQL 240
  241 CRIVDMLGNP PTWMLEMGKN SKKYYNSGFV NGRKTYELKS IEQFSIENNK TEQPGKQYFG 300
  301 EKTLDAIVLN YPRRKTTPKL TPEEHEERLC FIDFIKQFLE LNPLKRWTPD QAKNHPFITG 360
  361 ASFSQYCIDK QKPLLTTQRT RNRSHTIGNQ AVVPPSLQRA STYVSNEPEE FVHTRPLPQY 420
  421 YPPANENENV DEFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	2exeA
Description:	Crystal structure of the phosphorylated CLK3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits