YRC Public Data Repository - Protein Structure Prediction

Protein:	pex5
Organism:	Schizosaccharomyces pombe
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pex5.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	253.0	[0..56]	[596..1]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	232.0	[0..62]	[597..249]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	229.0	[0..73]	[583..543]
gi\|66347873, gi\|... - gi\|66347873\|ref\|NP_001018115.1\| O-linked N-acetylglucosamine transferase isoform 2 [Danio rerio], gi...	229.0	[0..90]	[596..2]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	228.0	[0..75]	[597..418]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	228.0	[0..90]	[596..2]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	228.0	[0..103]	[596..25]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEAGCSTL SNPLKKLTST AVVNNSTPSA QYRKHLTKSQ SRTYAPLQTL SEDQFTSFKN  60
   61 LQGNNSPLGN VVKNPVSLKT GNHTGTTTRG GSKENWVHSF SS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQQQNSKSAW TSEFSEVFLN SSENDRFRNL NQPLKQSFFG SAGLNLSSNT EIPLQSSLAI  60
   61 DETELAKKFE EASQISNKLE KEKDATGSKS IEELWEEHQK QLKNAGLEPA SLEEYQKQWE 120
  121 DFLKSNNISD DPYTSSVNSF ANDNLAHNKN IDPQIFQHSD TDNVVENSLQ TEDVYSQNQD 180
  181 ESSEVVKELN GI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPFVEAMNLI KNGGSISKAA VLLEQSVKEN PQHFEAWKWL GRIHTLLGNE SRVVEALLEA  60
   61 VKLDSTNLDL MMDLAVSYVN QSLNVQALVC LEDWIVNSFP QYRNRFAKIN ERFEEKDSAN 120
  121 DLLKMQMYFL DVAYELSLAK KRSSKVQAGL GIIMYMLKEY ERSADCFRQA LQDEPSNEIL 180
  181 WNKLGAALTN AEKNTEAVSS YNRAVSLQPQ YVRVRSNMAV SNINLGYFED AAKHLLAAID 240
  241 IIQNSSTSME SCESNEELWE MLRKVFLIGF QSTDLASQSY PGANTSYIRA QLSDLQGWPG 300
  301 VELE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	2j9qA
Description:	No description for 2j9qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits