YRC Public Data Repository - Protein Structure Prediction

Protein:	cox10
Organism:	Schizosaccharomyces pombe
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cox10.

Description	E-value	Query Range	Subject Range
gi\|94378174 - gi\|94378174\|ref\|XP_896747.2\| PREDICTED: similar to Coenzyme Q2 homolog, prenyltransferase (yeast) [M...	227.0	[0..22]	[383..7]
coq-2 - status:Confirmed UniProt:Q8I7J4 protein_id:AAN63396.1	223.0	[0..42]	[381..8]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	223.0	[0..68]	[365..2]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	220.0	[0..11]	[375..5]
COQ2_RAT - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1	218.0	[0..48]	[383..33]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	218.0	[0..10]	[363..557]
gi\|91227493, gi\|... - gi\|91227493\|ref\|ZP_01261830.1\| 4-hydroxybenzoate octaprenyltransferase [Vibrio alginolyticus 12G01],...	215.0	[0..83]	[364..5]
gi\|75854146, gi\|... - gi\|75854146\|ref\|ZP_00761859.1\| COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltr...	215.0	[0..83]	[364..5]
UBIA_VIBPA - 4-hydroxybenzoate octaprenyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22106... UBIA_VIBPA - 4-hydroxybenzoate octaprenyltransferase OS=Vibrio parahaemolyticus GN=ubiA PE=3 SV=1 gi\|153839844, gi... - gi\|153839844\|ref\|ZP_01992511.1\| 4-hydroxybenzoate polyprenyl transferase [Vibrio parahaemolyticus AQ...	214.0	[0..83]	[364..5]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHILNKGSS KSCIYTRPCL KRFYHQHYEH TGKLSRTFFS PTHIKYNRLS TLDTSTSTAN  60
   61 AAPDPQVLTF LSKRMQAAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYPKPSAFLE LGKPRLTVLV VLSTMSSYAL APYPGLSFNT LAWLTMGTAL CSISANAFNQ  60
   61 SMEPMLDCQM ARTRSRPIPR GAIRPEYAWL FATLTGIAGT SMSFLVNPTV GWLGLGNIVL 120
  121 YMGIYTPLKR ISIVNTWVGS LVGAIPPLMG WAACSGGDLL SHPGGLITAA ML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAWQFPHFNA FSTMVKDDYK KCGYQMMAWK NPALNARVSL RYALAFLPLS YAYISTGLVG  60
   61 PWYAVPATGT NMFLIARAWK FYRNRNYQNA RSLFFASLLH LPLLFTLTLA CHMIKVWNDS 120
  121 DSKNPVLGSE EDTLKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits