YRC Public Data Repository - Protein Structure Prediction

Protein:	sec9
Organism:	Schizosaccharomyces pombe
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec9.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	140.0	[0..3]	[225..1620]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	133.0	[0..8]	[120..712]
gi\|72016099, gi\|... - gi\|72016099\|ref\|XP_786229.1\| PREDICTED: similar to RNA-binding protein involved in epigenetic progra...	128.0	[0..17]	[210..559]
gi\|18309937, gi\|... - gi\|18309937\|ref\|NP_561871.1\| collagen triple helix repeat protein [Clostridium perfringens str. 13],...	128.0	[0..6]	[156..64]
gi\|23128642, gi\|... - gi\|23128642\|ref\|ZP_00110483.1\| hypothetical protein Npun02007810 [Nostoc punctiforme PCC 73102], gi\|...	127.0	[0..2]	[141..402]
gi\|47216921 - gi\|47216921\|emb\|CAG02093.1\| unnamed protein product [Tetraodon nigroviridis]	118.0	[0..2]	[142..662]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	118.0	[0..2]	[123..379]
gi\|76625388 - gi\|76625388\|ref\|XP_601325.2\| PREDICTED: similar to Collagen alpha 1(IX) chain precursor, partial [Bo...	118.0	[0..3]	[121..764]
COAA1_MOUSE - Collagen alpha-1(X) chain OS=Mus musculus GN=Col10a1 PE=2 SV=1 gi\|162317770, gi... - gi\|162318716\|gb\|AAI56931.1\| Collagen, type X, alpha 1 [synthetic construct], gi\|162317770\|gb\|AAI5619...	117.0	[0..2]	[125..280]
gi\|52143891, gi\|... - gi\|52143891\|ref\|YP_082937.1\| group-specific protein [Bacillus cereus E33L], gi\|51977360\|gb\|AAU18910....	115.0	[0..6]	[173..175]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLFKKKKG VSPHMYMLPE ESNSNTATNA PSYSVGGTTA NSYSSNSYND NNNSNSTYGS  60
   61 SNNYGNYGSS NNYGSYGASN TYGSNGSSNN YGNYGATNSN GDAGYSITPI RNDPYARKDM 120
  121 PPMKSSAAVT ERPSMHRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [139-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APSQDTLDLK KQELFAGARI QNDDESTTDT IPHNDDGTEG DEYGEGYRDG YEEDQEVEAI  60
   61 KQKIQFVKQD SLSSTRNALL MAGNAEQMGL ATLANLGEQT EKIATAEKEL DISKIHAKRA 120
  121 EEQARELKTL NRSMFAIHVP KPWGKAKRVA AEEARLAAKR DAERQDEMLN RQFAYRSQKR 180
  181 IDQAMKDNMK SNKKKGDSKG VSILERSHYQ FEPDAEDDAM EKEIDGNLDQ IGALATRLKG 240
  241 LAYATGQEID SQNARLGSIH DKSDRLDTDV YLNVERLRHI H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits