YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC30B4.03c
Organism:	Schizosaccharomyces pombe
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC30B4.03c.

Description	E-value	Query Range	Subject Range
LDB1_XENLA - LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2	346.0	[0..23]	[368..34]
gi\|2582524 - gi\|2582524\|gb\|AAB82582.1\| neural src interacting protein, short form; NSIP short form [Gallus gallus... gi\|542144332\|ref... - PREDICTED: LIM domain-binding protein 1 isoform X1 [Zonotrichia albicollis]	344.0	[0..23]	[368..34]
LDB1_XENTR - LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2 SV=1	343.0	[0..23]	[368..34]
gi\|109460221 - gi\|109460221\|ref\|XP_219948.4\| PREDICTED: similar to LIM domain-binding protein 1 (Nuclear LIM intera...	341.0	[0..23]	[368..228]
gi\|3372813, gi\|1... - gi\|3372813\|gb\|AAC28343.1\| LIM homeobox protein cofactor [Homo sapiens], gi\|195546926\|ref\|NP_00112430... ENSMMUT000000325... - null, null	341.0	[0..23]	[329..31]
gi\|3044066 - gi\|3044066\|gb\|AAC13274.1\| LIM domain binding protein [Homo sapiens] gi\|109073803 - gi\|109073803\|ref\|XP_001101147.1\| PREDICTED: similar to LIM domain binding 2 isoform 1 [Macaca mulatt...	339.0	[0..23]	[368..7]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVANYASMMY HNGSNILGYG VLRLLQYNEQ LMSGWESTMK DDIGYWRRFV HDFYTEKGTF  60
   61 RYNIDYKDSP NQEPKLFELS YAALPRFLYL SYCGKLKKMS FLLGNTKEFA IPNNGYFVES 120
  121 SRASILYQYQ GGVQVIVSGH LRAHFF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAPLLKLDSL EFSAVGHSEY LLRELMTNAS LALSQSRPPQ NQIQHDGVKS EDPSSESVNI  60
   61 NSSSSLLPDS PVNEYGLEPH IMRFMEITET ISGMRDLIAF TLAQRSGPTS ALHKFATALQ 120
  121 QQHQMQKSTS SNIPYANPAP SGFNGSPRNG DVASLASNYR YAKQPPTMPA NAISQANRLL 180
  181 DQNNIPNMDP SILPQSMPIA SVPPYSLQGI KRQGTHSPMV EGENPNNNPN FYSSDMLNAQ 240
  241 KRTKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits