YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC25B8.06c
Organism:	Schizosaccharomyces pombe
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC25B8.06c.

Description	E-value	Query Range	Subject Range
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	404.0	[0..12]	[451..170]
gi\|25293165 - pir\|\|D97918 serine-tRNA ligase (EC 6.1.1.11) [imported] - Streptococcus pneumoniae (strain R6) gi\|15902416, gi\|... - gi\|15902416\|ref\|NP_357966.1\| seryl-tRNA synthetase [Streptococcus pneumoniae R6], gi\|15457932\|gb\|AAK...	402.0	[0..20]	[453..18]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	402.0	[0..24]	[451..1]
SYS_STRPZ - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=serS PE=3 SV=1 gi\|56807927 - gi\|56807927\|ref\|ZP_00365750.1\| COG0172: Seryl-tRNA synthetase [Streptococcus pyogenes M49 591]	401.0	[0..24]	[454..1]
gi\|11271541 - pir\|\|E81053 seryl-tRNA synthetase NMB1684 [imported] - Neisseria meningitidis (strain MC58 serogroup... SYS_NEIMB - Serine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain MC58) GN=serS PE=3 SV=1 SYS_NEIMB - Serine--tRNA ligase OS=Neisseria meningitidis serogroup B GN=serS PE=3 SV=1	401.0	[0..24]	[454..1]
SYS_STRPF - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=serS PE=3 SV=1	400.0	[0..24]	[454..1]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	400.0	[0..24]	[451..1]
SYS_STRPD - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=serS PE=3 SV=1	400.0	[0..24]	[454..1]
SYS_STRPY - (Q99YE2) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) gi\|13622796, gi\|... - gi\|15675591\|ref\|NP_269765.1\| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS], gi\|13622796\|gb\|A... SYS_STRP1 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M1 GN=serS PE=3 SV=1 gi\|71911296, gi\|... - gi\|71911296\|ref\|YP_282846.1\| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005], gi\|71854078\|gb...	400.0	[0..24]	[454..1]
gi\|251816747, gi... - gi\|253752458\|ref\|YP_003025599.1\| seryl-tRNA synthetase [Streptococcus suis SC84], gi\|251816747\|emb\|C... gi\|56684577 - gi\|56684577\|gb\|AAW21989.1\| SerS [Streptococcus suis] gi\|251820530, gi... - gi\|253754284\|ref\|YP_003027425.1\| seryl-tRNA synthetase [Streptococcus suis P1/7], gi\|251820530\|emb\|C...	400.0	[0..24]	[453..1]

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Predicted Domain #1

Region A:
Residues: [1-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLLYLRTF STHTSYLRSS WQAILNYKYI YQNAEAVQRN CINRNLQAIA ETVPKIRSLI  60
   61 DEKESLKNEF FPLLSLKKEI TLQIERCSDP NERGKLVNEA KGLKKKTEEY NKIISKVTND 120
  121 LYQYCLAVPN TTLPTVPVGP EDKAVVVQKI GSPLVKKTGS LKDHLQIANE GINLEDAAQA 180
  181 SGHSFCYTTG DIALLEMAIT NYAMDFAISK GWCPVIPPTI VRTDIALACG FQPRDEEGQQ 240
  241 IYELDSYTSP LVSSPKQCLI GTAEISLAAL GFKKTFNNFT ERKVVGVSRA YRREAGARGK 300
  301 ENRGLYRLHE FTKVELFAWT HPSRSSEMFN EIVNFQKEFV ETLKIPARIL NMPTAELGSS 360
  361 ASQKYDIEAW MPARQSYGEI TSASNCLEYQ ARRLLTRYRN DKDSGFVHTL NGTAAAIPRL 420
  421 IIAILENHQQ EDGTVKVPET LVPYIHKEYL FKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits