YRC Public Data Repository - Protein Structure Prediction

Protein:	mug16
Organism:	Schizosaccharomyces pombe
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug16.

Description	E-value	Query Range	Subject Range
gi\|59858427, gi\|... - gi\|62460538\|ref\|NP_001014921.1\| unc-50 homolog [Bos taurus], gi\|59858427\|gb\|AAX09048.1\| unc-50 homol...	291.0	[0..3]	[230..30]
gi\|109103934 - gi\|109103934\|ref\|XP_001103333.1\| PREDICTED: similar to unc-50 homolog [Macaca mulatta]	290.0	[0..3]	[230..30]
gi\|114579090, gi... - gi\|55598910\|ref\|XP_515641.1\| PREDICTED: unc-50 homolog isoform 6 [Pan troglodytes], gi\|114579095\|ref... UNC50 - unc-50 homolog (C. elegans)	289.0	[0..3]	[230..30]
gi\|73970082 - gi\|73970082\|ref\|XP_854439.1\| PREDICTED: similar to unc-50 homolog [Canis familiaris]	288.0	[0..3]	[230..30]
UNC50_RAT - Protein unc-50 homolog OS=Rattus norvegicus GN=Unc50 PE=1 SV=1	287.0	[0..3]	[230..30]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSFRNGFR LLKLSQMDFE RAWWDMANLF RAPRRVYRSI TLRKQNINRY GREDFSFIVL  60
   61 FSCMIVISAL LWALFYMNTP KGYVTTITFM LFVDFGAVGV IMATMYYFIA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [111-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRFLMKSNDT ILSSTDYQLE WNYCFDVHCN SFFPSFVLLY VIQLFLLPVI TRDNFISLFM  60
   61 GNTLYLVALC YYSYLTFIGY QILPFLKNTH ALLLPIPMFF IMWALSLLGF NVPKHVVDVY 120
  121 FGKSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits