YRC Public Data Repository - Protein Structure Prediction

Protein:	arx1
Organism:	Schizosaccharomyces pombe
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arx1.

Description	E-value	Query Range	Subject Range
gi\|89266720 - gi\|89266720\|emb\|CAJ82581.1\| proliferation-associated 2G4 [Xenopus tropicalis]	287.0	[0..1]	[410..1]
gi\|73968311 - gi\|73968311\|ref\|XP_531629.2\| PREDICTED: similar to Proliferation-associated protein 2G4 (Cell cycle ... gi\|77736343, gi\|... - gi\|77736343\|ref\|NP_001029871.1\| ErbB3-binding protein 1 [Bos taurus], gi\|73587133\|gb\|AAI03293.1\| Pro...	287.0	[0..1]	[408..1]
gi\|54311187 - gi\|54311187\|gb\|AAH84760.1\| Pa2g4 protein [Xenopus laevis]	284.0	[0..1]	[408..1]
gi\|68399974 - gi\|68399974\|ref\|XP_685786.1\| PREDICTED: similar to Proliferation-associated 2G4-like isoform 1 [Dani...	284.0	[0..1]	[405..1]
gi\|116283780, gi... - gi\|116283797\|gb\|AAH37623.1\| Pa2g4 protein [Mus musculus], gi\|116283780\|gb\|AAH28926.1\| Pa2g4 protein ... gi\|53733678 - gb\|AAH84011.1\| Unknown (protein for IMAGE:7201175) [Xenopus laevis]	281.0	[0..1]	[410..1]

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Predicted Domain #1

Region A:
Residues: [1-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELDPSDSNS RVVDASQFSK YRDAGALVSK AFHQVASRCV PGASTREISS YGDNLLHEYK  60
   61 SSIYKSQRFE KGIAEPTSIC VNNCAYNYAP GPESVIAGND NSYHLQVGDV TKISMGLHFD 120
  121 GYTALISHTI VVTPPPQPGM GPYIGPGADA ICAAHYASKA VANLLATNNS DDPITGSRLR 180
  181 KIVDDIASQF RVSVCPGSRI RRISRFLVGQ PTIDRLEEDQ NTKHAVEWPA PEEETRKADV 240
  241 TNSLDPANVL STELNTWHVM PKEAWLIDIS MSSQPISSLK EHPDLKPTLY IHDVNVSYML 300
  301 KLKASRSLLS EIKKEKSVFP FHFGSLSSER NLLGLRELTD RHILVPMPVL ISSPSNVIAR 360
  361 EELTVITQPN PSSDLLCLTV PTPPSYVKSD FSLEDGTDAA LICEGINVNI KSININV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.30103
Match:	2q8kA
Description:	No description for 2q8kA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits