YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2C4.09
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2C4.09.

Description	E-value	Query Range	Subject Range
gi\|67539206, gi\|... - gi\|67539206\|ref\|XP_663377.1\| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	257.0	[0..8]	[216..106]
gi\|50731283 - gi\|50731283\|ref\|XP_417216.1\| PREDICTED: hypothetical protein [Gallus gallus]	256.0	[0..16]	[215..43]
gi\|12844128, gi\|... - gi\|21313508\|ref\|NP_079791.1\| coiled-coil domain containing 90B [Mus musculus], gi\|12844128\|dbj\|BAB26...	256.0	[0..7]	[215..28]
CC90B_RAT - Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1	252.0	[0..7]	[215..28]
CCDC90B - coiled-coil domain containing 90B gi\|117645404, gi... - gi\|117645808\|emb\|CAL38371.1\| hypothetical protein [synthetic construct], gi\|117645404\|emb\|CAL38168.1...	251.0	[0..7]	[215..28]
gi\|114639579 - gi\|114639579\|ref\|XP_001175206.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	251.0	[0..7]	[215..28]
gi\|109108128 - gi\|109108128\|ref\|XP_001098899.1\| PREDICTED: hypothetical protein [Macaca mulatta]	251.0	[0..7]	[215..28]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLKIPCNSI YHQFQPLFRA RTVHKVRSLG LNGFYRKYHG FNSLRFVRVL QEAGIDDKKS  60
   61 ETLMRLISNV YSDMHEKISD FSVTKEQQDR VMYQQKVDFA HLRSELQSIE RQEMVALHSQ 120
  121 VEQLFSDVER LKTSFRDQLN NSTSEARLQL NIDRLNHYDE TASQDLKLRE LSAEIDTEMS 180
  181 NFRTQLASFK TQTLQWVFGI VTGSGALLLA YVRLII

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.71
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits