YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21D10.10
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21D10.10.

Description	E-value	Query Range	Subject Range
gi\|28516430, gi\|... - gi\|94376478\|ref\|XP_985227.1\| PREDICTED: similar to p300/CBP-associated factor [Mus musculus], gi\|285...	178.0	[0..37]	[285..586]
gi\|47218844 - gi\|47218844\|emb\|CAG02829.1\| unnamed protein product [Tetraodon nigroviridis]	178.0	[0..37]	[285..585]
gi\|50733046 - gi\|50733046\|ref\|XP_426001.1\| PREDICTED: similar to PCAF [Gallus gallus]	174.0	[0..37]	[285..716]
gi\|73965807 - gi\|73965807\|ref\|XP_849978.1\| PREDICTED: similar to GCN5 general control of amino-acid synthesis 5-li...	172.0	[0..37]	[288..594]
gi\|83764659 - gi\|83764659\|dbj\|BAE54803.1\| unnamed protein product [Aspergillus oryzae] gi\|169764667 - gi\|169764667\|ref\|XP_001816805.1\| hypothetical protein [Aspergillus oryzae RIB40]	171.0	[0..29]	[295..125]
gi\|66849200, gi\|... - gi\|70993438\|ref\|XP_751566.1\| histone acetyltransferase (Gcn5) [Aspergillus fumigatus Af293], gi\|6684... gi\|159125504 - gi\|159125504\|gb\|EDP50621.1\| histone acetyltransferase (Gcn5), putative [Aspergillus fumigatus A1163]	170.0	[0..29]	[297..125]
gi\|17017400, gi\|... - gi\|223949013\|gb\|ACN28590.1\| unknown [Zea mays], gi\|18447805\|emb\|CAD22097.1\| histone acetyltransferas...	170.0	[0..37]	[298..256]
gi\|38099365, gi\|... - gi\|39965407\|ref\|XP_365098.1\| hypothetical protein MG09943.4 [Magnaporthe grisea 70-15], gb\|EAA46722....	169.0	[0..29]	[293..31]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAQEVAVL QYLDIQQENP NAPNEELFNR TAESSLLLEP IEQDQLKDLV EEWMHDSNKS  60
   61 DSKLLSNQVS QNDNDARKNL RKRLRNDVLK DLAEEIQGCE KKLESLYEEV AKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAKAVEDQLA LEEADKEAKK AKTEAPVEAA NKSLRSRKKT PEIAAPANIE PEVAPTTKTP  60
   61 KKRAALSNEE KQSLKKFQSA MLPMLDNISN HRFGAPFSHP VNRKEAPDYD SLVYKPQDLR 120
  121 TLKNMIKEGN ITEVDELYRE VLRIFANCKM YNGSDPANAM SIWGDECFRY TEELFDIYRQ 180
  181 ASTRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	2f6jA
Description:	No description for 2f6jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits