YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC869.04
Organism:	Schizosaccharomyces pombe
Length:	410 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC869.04.

Description	E-value	Query Range	Subject Range
gi\|226285481 - gi\|226285481\|gb\|EEH41047.1\| formamidase [Paracoccidioides brasiliensis Pb01] gi\|27368050, gi\|... - gi\|47118080\|gb\|AAT11170.1\| formamidase [Paracoccidioides brasiliensis], gi\|27368050\|gb\|AAN87355.1\| f...	605.0	[0..3]	[409..6]
gi\|38105520, gi\|... - gi\|39942906\|ref\|XP_360990.1\| hypothetical protein MG03533.4 [Magnaporthe grisea 70-15], gb\|EAA51938....	599.0	[0..3]	[409..26]
gi\|27803067 - gi\|27803067\|emb\|CAD60770.1\| unnamed protein product [Podospora anserina]	598.0	[0..2]	[409..5]
gi\|12620135 - gi\|12620135\|gb\|AAG60585.1\|AF274009_2 formamidase [Emericella nidulans] gi\|49094506, gi\|... - gi\|67536814\|ref\|XP_662181.1\| hypothetical protein AN4577.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	597.0	[0..2]	[409..5]
gi\|66846968, gi\|... - gi\|70988974\|ref\|XP_749337.1\| formamidase FmdS [Aspergillus fumigatus Af293], gi\|66846968\|gb\|EAL87299... gi\|159128750 - gi\|159128750\|gb\|EDP53864.1\| formamidase FmdS [Aspergillus fumigatus A1163]	596.0	[0..3]	[409..6]
gi\|115398606, gi... - gi\|115398606\|ref\|XP_001214892.1\| formamidase [Aspergillus terreus NIH2624], gi\|114191775\|gb\|EAU33475...	596.0	[0..3]	[410..6]
gi\|91778402, gi\|... - gi\|91778402\|ref\|YP_553610.1\| formamidase (FmdA) [Burkholderia xenovorans LB400], gi\|91691062\|gb\|ABE3...	594.0	[0..4]	[400..3]
gi\|83774849 - gi\|83774849\|dbj\|BAE64972.1\| unnamed protein product [Aspergillus oryzae] gi\|220696257, gi... - gi\|238493053\|ref\|XP_002377763.1\| formamidase FmdS [Aspergillus flavus NRRL3357], gi\|220696257\|gb\|EED... gi\|169783286 - gi\|169783286\|ref\|XP_001826105.1\| hypothetical protein [Aspergillus oryzae RIB40]	594.0	[0..3]	[408..6]
gi\|28921236, gi\|... - gi\|32421387\|ref\|XP_331137.1\| hypothetical protein [Neurospora crassa], gi\|28921236\|gb\|EAA30546.1\| hy... gi\|85093899 - gi\|85093899\|ref\|XP_959782.1\| hypothetical protein [Neurospora crassa OR74A]	593.0	[0..3]	[409..67]
gi\|46324470, gi\|... - gi\|67543421\|ref\|ZP_00421353.1\| Formamidase [Burkholderia vietnamiensis G4], gi\|67535098\|gb\|EAM31833....	592.0	[0..3]	[399..2]

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Predicted Domain #1

Region A:
Residues: [1-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRTIVKVD LNKPAWEQPN LHNRWHPDIP FAESIDEGET VKIECLDWTG GQIKNDDSAE  60
   61 DIKNVDLTRI HYLSGPFEIK GAEPGDVLVV EIQDVQPLEN QPWGYSGIFA KENGGGFLDE 120
  121 HYPKAAKAVF DFEGIFCSSR HIPGVRFPGL IHPGIIGTAP SKEILAEWNR REGALVAENP 180
  181 HSTHVMAQLP NASYAFAGIL ADEKLSATVA SEGARTIPGR PENGGNCDIK NLSRGSKVFL 240
  241 PVHVPGAKLS IGDLHFSQGD GEISFCGAIE MAGSITIKCK ILKNGISDLA MKSPMYLPGP 300
  301 VEPHFSPSRY LTFEGFSVDE SGKQHYLCTT TAYRQTCLRV IEYFRRFGYN DYQLYLLLSC 360
  361 APIQGHVAGI VDIPNSCTTI GVPMDIFEFD VSPNGKAKII DLGSCAFANS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	2ii1A
Description:	No description for 2ii1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits