YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4G3.13c
Organism:	Schizosaccharomyces pombe
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4G3.13c.

Description	E-value	Query Range	Subject Range
gi\|49070532, gi\|... - gi\|71007040\|ref\|XP_758087.1\| hypothetical protein UM01940.1 [Ustilago maydis 521], ref\|XP_399555.1\| ...	193.0	[0..8]	[210..6]
gi\|67539460, gi\|... - gi\|67539460\|ref\|XP_663504.1\| hypothetical protein AN5900.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	183.0	[0..10]	[206..14]
gi\|94384289 - gi\|94384289\|ref\|XP_995997.1\| PREDICTED: similar to Autocrine motility factor receptor (AMF receptor)...	179.0	[0..42]	[206..372]
gi\|67969859 - gi\|67969859\|dbj\|BAE01277.1\| unnamed protein product [Macaca fascicularis]	177.0	[0..42]	[206..359]
gi\|109128568 - gi\|109128568\|ref\|XP_001091030.1\| PREDICTED: similar to autocrine motility factor receptor [Macaca mu...	176.0	[0..42]	[206..359]
gi\|114662604 - gi\|114662604\|ref\|XP_001135064.1\| PREDICTED: autocrine motility factor receptor [Pan troglodytes]	176.0	[0..42]	[206..387]
AMFR - autocrine motility factor receptor	175.0	[0..42]	[206..450]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPEQLAGCA VVLTVTVLTL RWMFRVDKGG EVSESRTSSS GVDNEPPVNS EHVHLVKTVF  60
   61 PHLESSAIAY DLQKTKNVDA TIENALRGQP LPLPPRNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	2ekfA
Description:	No description for 2ekfA was found.

Predicted Domain #2

Region A:
Residues: [99-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLYARFPLSA GAGASSHSEE TTPSHEVTSN VSSGSSASSL ASNEHRSLIE TYNLSSRISS  60
   61 SDNSSSSTGN EEVRNRSKLP SSKKEREELF RKRKEEMILA ARKRMEGKIK GEKQDKN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.997
Match:	1xioA
Description:	Anabaena sensory rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits