YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1235.11
Organism:	Schizosaccharomyces pombe
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1235.11.

Description	E-value	Query Range	Subject Range
MPC1_RAT - Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus GN=Mpc1 PE=3 SV=1 MPC1_MOUSE - Mitochondrial pyruvate carrier 1 OS=Mus musculus GN=Mpc1 PE=1 SV=1	176.0	[0..12]	[119..2]
gi\|148235923, gi... - gi\|56541218\|gb\|AAH87474.1\| LOC496160 protein [Xenopus laevis], gi\|148235923\|ref\|NP_001088849.1\| hypo...	175.0	[0..12]	[121..2]
gi\|85119469 - gi\|85119469\|ref\|XP_965638.1\| hypothetical protein NCU02507 [Neurospora crassa OR74A] gi\|32422525, gi\|... - gi\|32422525\|ref\|XP_331706.1\| hypothetical protein [Neurospora crassa], gi\|28927450\|gb\|EAA36402.1\| pr...	175.0	[0..12]	[141..1]
gi\|73945789, gi\|... - gi\|73945793\|ref\|XP_863111.1\| PREDICTED: similar to Brain protein 44-like protein isoform 5 [Canis fa...	175.0	[0..12]	[119..2]
gi\|50416693, gi\|... - gi\|89272007\|emb\|CAJ82200.1\| brain protein 44-like [Xenopus tropicalis], gi\|55741964\|ref\|NP_001006893... gi\|55741964 - ref\|NP_001006893.1\| brain protein 44-like [Xenopus tropicalis]	174.0	[0..12]	[118..2]
MPC1_BOVIN - Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1	173.0	[0..12]	[119..2]
gi\|114610222 - gi\|114610222\|ref\|XP_001137474.1\| PREDICTED: brain protein 44-like [Pan troglodytes]	173.0	[0..12]	[119..2]
BRP44L - brain protein 44-like	173.0	[0..12]	[119..2]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASEKLSQK AAQSVTRRFI TWLKSPDFRK YLCSTHFWGP LSNFGIPIAA ILDLKKDPRL  60
   61 ISGRMTGALI LYSSVFMRYA WMVSPRNYLL LGCHAFNTTV QTAQGIRFVN FWYGKEGASK 120
  121 QSVFENIMQA AKHPESGTRQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.920819
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.857	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits