YRC Public Data Repository - Protein Structure Prediction

Protein:	bet3
Organism:	Schizosaccharomyces pombe
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bet3.

Description	E-value	Query Range	Subject Range
gi\|114196916, gi... - gi\|115385354\|ref\|XP_001209224.1\| trafficking protein particle complex subunit 3 [Aspergillus terreus...	310.0	[0..4]	[183..8]
gi\|83774243 - gi\|83774243\|dbj\|BAE64368.1\| unnamed protein product [Aspergillus oryzae] gi\|169782076 - gi\|169782076\|ref\|XP_001825501.1\| hypothetical protein [Aspergillus oryzae RIB40]	310.0	[0..4]	[183..7]
gi\|49134378, gi\|... - gi\|67904198\|ref\|XP_682355.1\| hypothetical protein AN9086.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	308.0	[0..4]	[183..7]
gi\|66844329, gi\|... - gi\|70982354\|ref\|XP_746705.1\| TRAPP complex component Bet3 [Aspergillus fumigatus Af293], gi\|66844329... gi\|159123052 - gi\|159123052\|gb\|EDP48172.1\| BET3 family protein [Aspergillus fumigatus A1163]	307.0	[0..4]	[183..8]
gi\|114555735 - gi\|114555735\|ref\|XP_513093.2\| PREDICTED: similar to bet3 [Pan troglodytes]	304.0	[0..16]	[183..58]
gi\|119177671, gi... - gi\|90299374\|gb\|EAS29005.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119177671\|re...	304.0	[0..4]	[183..7]
BET3 - Hydrophilic protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Go... gi\|207343346 - gi\|207343346\|gb\|EDZ70828.1\| YKR068Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941608 - gi\|151941608\|gb\|EDN59971.1\| transport protein particle (TRAPP) component [Saccharomyces cerevisiae Y... gi\|190409881 - gi\|190409881\|gb\|EDV13146.1\| transport protein particle component [Saccharomyces cerevisiae RM11-1a] BET3_YEAST - Trafficking protein particle complex subunit BET3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	303.0	[0..2]	[183..9]
gi\|60593497 - gi\|60593497\|pdb\|1SZ7\|A Chain A, Crystal Structure Of Human Bet3	301.0	[0..16]	[183..22]
gi\|44986330 - gi\|44986330\|gb\|AAS54790.1\| AGR300Wp [Ashbya gossypii ATCC 10895] gi\|45201396, gi\|... - gi\|45201396\|ref\|NP_986966.1\| AGR300Wp [Ashbya gossypii ATCC 10895], gi\|44986330\|gb\|AAS54790.1\| AGR30...	301.0	[0..2]	[183..24]
gi\|145011275, gi... - gi\|39945424\|ref\|XP_362249.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA50935....	300.0	[0..4]	[183..7]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKIGEDV YKKVDKVNAE LFVLTYGSIV AQLCKDMNYE KVNEELDKMG YNIGIRLIED  60
   61 FLAKTEWPRC ADFRETGETV AKVGFKVFLN FSPIISSVSD DGNTFVLTLD DNPLAEFVEL 120
  121 PADARQKLWY SNILCGVIRG ALEMLQMDVD AVFLRDILRG DEHTEIRVHL KRILKEEIPP 180
  181 GDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.045757
Match:	1sz7A
Description:	Crystal structure of Human Bet3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits