YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC27B12.14
Organism:	Schizosaccharomyces pombe
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC27B12.14.

Description	E-value	Query Range	Subject Range
gi\|151943452 - gi\|151943452\|gb\|EDN61763.1\| cytochrome B mRNA processing [Saccharomyces cerevisiae YJM789] gi\|190406810 - gi\|190406810\|gb\|EDV10077.1\| protein CBP4, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] CBP4 - Mitochondrial protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome ...	92.0	[0..9]	[67..35]
CBP4_CANAL - Assembly factor CBP4 OS=Candida albicans GN=CBP4 PE=3 SV=1 gi\|238878732 - gi\|238878732\|gb\|EEQ42370.1\| hypothetical protein CAWG_00579 [Candida albicans WO-1] CBP4_CANAL - Assembly factor CBP4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBP4 PE=3 SV=1	89.0	[0..9]	[67..14]
CBP4_ASHGO - Assembly factor CBP4 OS=Ashbya gossypii GN=CBP4 PE=3 SV=1 CBP4_ASHGO - Assembly factor CBP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) G...	86.0	[0..9]	[67..12]
CBP4_CANGA - Assembly factor CBP4 OS=Candida glabrata GN=CBP4 PE=3 SV=1 CBP4_CANGA - Assembly factor CBP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y...	81.0	[0..3]	[67..8]
CBP4_KLULA - Assembly factor CBP4 OS=Kluyveromyces lactis GN=CBP4 PE=3 SV=1 CBP4_KLULA - Assembly factor CBP4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / ...	74.0	[0..9]	[67..12]
gi\|49657824, gi\|... - gi\|50427093\|ref\|XP_462154.1\| hypothetical protein DEHA0G14993g [Debaryomyces hansenii CBS767], gi\|49...	74.0	[0..9]	[67..15]
CBP4_YARLI - Assembly factor CBP4 OS=Yarrowia lipolytica GN=CBP4 PE=3 SV=1 CBP4_YARLI - Assembly factor CBP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CBP4 PE=3 SV=1	48.0	[0..9]	[69..26]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVVKSIVY GVGIVGFGYM TMKLTTPSPE RVVNSLPPDL RASYEMNKKD RSQAEGVLRM  60
   61 IEDAKRNPKN LV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.676	c.55.7	Methylated DNA-protein cysteine methyltransferase domain
View	Download	0.511	a.4.1	Homeodomain-like
View	Download	0.480	d.6.1	Prion-like
View	Download	0.480	d.6.1	Prion-like
View	Download	0.473	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.471	a.159.2	FF domain
View	Download	0.415	a.30.2	Homodimeric domain of signal transducing histidine kinase
View	Download	0.389	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.352	a.76.1	Iron-dependent represor protein, dimerization domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits