YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6F6.13c
Organism:	Schizosaccharomyces pombe
Length:	778 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6F6.13c.

Description	E-value	Query Range	Subject Range
gi\|68475435, gi\|... - gi\|68475435\|ref\|XP_718240.1\| hypothetical protein CaO19.2574 [Candida albicans SC5314], gi\|68475236\|... orf19.10106, orf... - orf19.2574 CGDID:CAL0002523 Assembly 19, Contig19-10151 (81726, 79006) CDS, reverse complemented, tr...	706.0	[0..5]	[757..97]
gi\|46106841, gi\|... - gi\|46106841\|ref\|XP_380613.1\| hypothetical protein FG00437.1 [Gibberella zeae PH-1], gi\|42545943\|gb\|E...	705.0	[0..10]	[764..203]
gi\|7493768, gi\|3... - pir\|\|T18244 conserved hypothetical protein - yeast (Candida albicans), gi\|3859678\|emb\|CAA22015.1\| co...	692.0	[0..5]	[757..97]
gi\|40740309, gi\|... - gi\|67527235\|ref\|XP_661632.1\| hypothetical protein AN4028.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	683.0	[0..35]	[762..205]
gi\|159130607 - gi\|159130607\|gb\|EDP55720.1\| DUF726 domain protein [Aspergillus fumigatus A1163] gi\|70990554, gi\|... - gi\|70990554\|ref\|XP_750126.1\| DUF726 domain protein [Aspergillus fumigatus Af293], gi\|66847758\|gb\|EAL...	662.0	[0..1]	[759..125]
gi\|85116841 - gi\|85116841\|ref\|XP_965132.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926935, gi\|... - gi\|32423013\|ref\|XP_331946.1\| hypothetical protein [Neurospora crassa], gi\|28926935\|gb\|EAA35896.1\| hy...	655.0	[0..35]	[741..248]
gi\|169771233 - gi\|169771233\|ref\|XP_001820086.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767945 - gi\|83767945\|dbj\|BAE58084.1\| unnamed protein product [Aspergillus oryzae]	641.0	[0..31]	[762..214]
gi\|114193936, gi... - gi\|115391015\|ref\|XP_001213012.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	612.0	[0..36]	[759..229]
gi\|44981696 - gi\|44981696\|gb\|AAS51446.1\| ACR220Cp [Ashbya gossypii ATCC 10895] gi\|45185906, gi\|... - gi\|45185906\|ref\|NP_983622.1\| ACR220Cp [Ashbya gossypii ATCC 10895], gi\|44981696\|gb\|AAS51446.1\| ACR22...	606.0	[0..44]	[756..107]
gi\|111067278 - gi\|111067278\|gb\|EAT88398.1\| hypothetical protein SNOG_04638 [Phaeosphaeria nodorum SN15]	567.0	[0..10]	[765..218]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISSPGTRC SSDLKDPTLQ QYSAESVSTE QSLGTFEESK GSITENYVQD SSVDEHDDGN  60
   61 WQPMEVISLE PTHLINDIDD DNEIIEEKKE TEKVEESEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPRYTRVFRD EDDDQKHQLD SEAIKLLDIA DHGNEEISMD SQLEITGNIL SETEKMAYAG  60
   61 VCRLLILKMV DKIACFTTLP WYRGECKAAL EDTIMWADKT TSCIYEHLGV TVEEQKMIEN 120
  121 LHKHSVQIDD LSKILVSAHR AQTVSSLDAV LVDEVESSDS LSSLGKEKPV QIDVRWTVLC 180
  181 DLFLVLISKS LYDCRSRSLL MAVGEVLD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [308-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INEFDVAKFE KHIVETIQID DTGELEAGSS ANTEAVMKLR RKVSRRKKYI LMGLAGIGGG  60
   61 LVIGLSSGLL APIISAGIGA AFTTVGLSGV ATSGFLAGGG SAALITAGGA ISGAHIGTTG 120
  121 MAHRKADVKT FEFRPLHAQR RANVIVTVSG WMLSKEDDVR LSFATLDPIV GDIYSVFWEP 180
  181 EMLASAGQTM NILATEVVTQ SLQQVLGSTV LVSLMGALQW PLILTKLGYL I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.21467
Match:	PF05277.3
Description:	No description for PF05277.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [539-658]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNPWNNSLDR AKATGQLLAD MLCYRSLGVR PVTLVGYSLG ARVIYYCLRE LEKKKEFSII  60
   61 ENVYLFGTPV IFKRTSWLKA ASVVSGRFVN GYKKNDWILG YLFRATSGGI GRVAGLRQID 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2fweA
Description:	No description for 2fweA was found.

Predicted Domain #5

Region A:
Residues: [659-778]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CIPGIENIDV TNLVSGHLAY RESMPILLAA VGFEVLDEEV DLVSEPIPEP LRERQSQLLY  60
   61 EIEAEECQNK QKELIEKSLM QKGRSLSPKK SNAFFDSKKI REELKKVKKK YGSSFNSRWY 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits