YRC Public Data Repository - Protein Structure Prediction

Protein:	mug80
Organism:	Schizosaccharomyces pombe
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug80.

Description	E-value	Query Range	Subject Range
gi\|46108818, gi\|... - gi\|46108818\|ref\|XP_381467.1\| hypothetical protein FG01291.1 [Gibberella zeae PH-1], gi\|42547757\|gb\|E...	176.0	[0..64]	[413..17]
cdc13 - cyclin Cdc13 CG23_SCHPO - G2/mitotic-specific cyclin cdc13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc13 PE=...	176.0	[0..70]	[413..24]
gi\|114630134 - gi\|114630134\|ref\|XP_001150734.1\| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]	160.0	[0..175]	[451..12]
gi\|1752809 - gi\|1752809\|dbj\|BAA14010.1\| cyclin A [Asterina pectinifera]	160.0	[0..79]	[436..16]
gi\|109088731 - gi\|109088731\|ref\|XP_001093967.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 isoform 5 [Ma... gi\|85397687, gi\|... - gi\|85397976\|gb\|AAI04774.1\| CCNY protein [Homo sapiens], gi\|85397687\|gb\|AAI04802.1\| CCNY protein [Hom... gi\|114630136, gi... - gi\|114630150\|ref\|XP_001150087.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 [Pan troglody... gi\|117646844 - gi\|117646844\|emb\|CAL37537.1\| hypothetical protein [synthetic construct]	159.0	[0..175]	[451..5]
gi\|18766393 - gi\|18766393\|gb\|AAL78998.1\|AF465728_1 cyclin fold protein 1 variant a [Homo sapiens]	157.0	[0..143]	[451..3]
gi\|73948601 - gi\|73948601\|ref\|XP_848557.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 [Canis familiaris...	157.0	[0..175]	[451..82]
gi\|9624459 - gi\|9624459\|gb\|AAF90185.1\|AF280093_1 CLG1 cyclin-like protein [Ajellomyces capsulatus]	156.0	[0..31]	[366..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPYQHTSR SQVQPPLAAP GLSMFAPVSS SNSANSASSV AALLSHAPMY GLGQRRPSFL  60
   61 PGVSVPDTLS VRSGFSIPSS SHHPSAVPSL LSQHRLQQPQ PRLYPSAPLN YYWPSYQSVP 120
  121 SAAPPPPSQQ RYMPDSAVAY NPNQDQFGNS VNVSAACNNV SAPLIANNCA PSFY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSRHPVADVP VTNNTATTTS ETDNTIPGNL NMPSVANVQQ RISPVCKTNM EDQEETVYTG  60
   61 GVAAKLDYKM DQMVEYLSIM TCKLYARFLN NAQMHSLANS LPGLVFSFRK VVTQILTSTR 120
  121 LPRASCLLAL SYLSDRLDAA SQTTDFVNQW TKESLFFQIC ALLTTALILA NKFLDDNTFT 180
  181 NQSWSQVTGF RTALLNSFEQ DWLASMSWNL SPGPRGQKAW EWWSASYSLF TSSNATYSGE 240
  241 QKTYSPTTLS TNAPPSPSSG RSCSNCNYYY PYTPVGYYPV YNRYAMT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1finB
Description:	Cyclin A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits