YRC Public Data Repository - Protein Structure Prediction

Protein:	mug190
Organism:	Schizosaccharomyces pombe
Length:	1188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug190.

Description	E-value	Query Range	Subject Range
gi\|38102618, gi\|... - gi\|39973519\|ref\|XP_368150.1\| hypothetical protein MGG_01094 [Magnaporthe grisea 70-15], gb\|EAA49436....	842.0	[0..15]	[1186..10]
gi\|46117072, gi\|... - gi\|46117072\|ref\|XP_384554.1\| hypothetical protein FG04378.1 [Gibberella zeae PH-1], gi\|42549916\|gb\|E...	830.0	[0..10]	[1186..5]
gi\|85082661 - gi\|85082661\|ref\|XP_956959.1\| hypothetical protein NCU01510 [Neurospora crassa OR74A] gi\|32414939, gi\|... - gi\|32414939\|ref\|XP_327949.1\| hypothetical protein ( (AL355932) conserved hypothetical protein [Neuro...	829.0	[0..7]	[1186..2]
gi\|49096602, gi\|... - gi\|67538908\|ref\|XP_663228.1\| hypothetical protein AN5624.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	792.0	[0..1]	[1185..1]
gi\|70993742, gi\|... - gi\|70993742\|ref\|XP_751718.1\| C2 domain protein [Aspergillus fumigatus Af293], gi\|66849352\|gb\|EAL8968...	690.0	[0..2]	[1185..5]
gi\|169771469 - gi\|169771469\|ref\|XP_001820204.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768063 - gi\|83768063\|dbj\|BAE58202.1\| unnamed protein product [Aspergillus oryzae]	683.0	[0..1]	[1185..1]
gi\|111063891 - gi\|111063891\|gb\|EAT85011.1\| hypothetical protein SNOG_07545 [Phaeosphaeria nodorum SN15]	682.0	[0..10]	[1185..3]
gi\|115391283, gi... - gi\|115391283\|ref\|XP_001213146.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	665.0	[0..1]	[1185..1]
gi\|88179243, gi\|... - gi\|88179243\|gb\|EAQ86711.1\| hypothetical protein CHGG_07964 [Chaetomium globosum CBS 148.51], gi\|1161...	641.0	[0..14]	[1038..8]
gi\|90306523, gi\|... - gi\|90306523\|gb\|EAS36154.1\| hypothetical protein CIMG_01508 [Coccidioides immitis RS], gi\|119194267\|r...	627.0	[0..12]	[1186..3]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHSGDSTK QQHYRSSDPY SGRRPIPTIP KFFRDRKQRA EKKEEQQREQ TENEKLFDPI  60
   61 TQRDVEINDV HFDYAKTYDD PSFTVPNQSI QGSSLPSEKP YLSSNQPTNV YKQHQDDLAP 120
  121 PEADNQITRD VPISDEKTNI LFFPSPSID

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSYVSKEVKQ KTGQYSLFAY IFSLVISWFF THSIIISAVL PLAISSCMYL WMQNIYAVAK  60
   61 DAEWGAEQKR GEYARLNLIP ESAEWMNHLL EKVWPLINPE MFSSVADQIE DVMQASIPSF 120
  121 VENVRVASLD QGSHPVRVVS IRSLPSGEAS ESFSEKQASE AEH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDEPEQQRKQ FYNFELCLAY HAKPVEDATS TSARASNLHL RIVFYPGIKG TVGFPLPIWV  60
   61 EIKGFVARIR FRCELMPEVP FLKNVTFSLM GLPELNVSAV PVAEGGVNIF GLPLISKFVN 120
  121 DAISAAANEY VSPKSMTIDL S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [454-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTLLGDDIKK EVNALGVIFV HINRAEDLSK QDVNGLSDAY ITVGFHKFGK PLYCTRVVKQ  60
   61 DLNPIWNEYA FIPVFPDQVK AGEKISIELW DSDRFSPDDV VGRTKIGLHL LIQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2d8kA
Description:	No description for 2d8kA was found.

Predicted Domain #5

Region A:
Residues: [568-647]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKMHERCDT LTGISEDTSL PGRVFYEIGY FPRAEFKPSL KTSGHDITIP RSMRDDPAFQ  60
   61 NPHGSLDNKE EEAAVTTAPD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [648-935]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEYPSGILSF TVHQAVNLQM NHPTGTFGNV SGNYNTSPAQ SVGDVTAEEG SELPSSYVCV  60
   61 DLDDTLVYKT RTKVFTSNPI YNAGSEKFVK DWRNAMLCFT VRDFKLREHD SILGVVNIPL 120
  121 ATTLTTSSQL TKWYPIQGGI GFGSVRISIL FRSMKLKIPR NLLGWDIGTL EFMDRQIVAE 180
  181 GTGSVSDVSF SSIRVNIAGV KITAKSSTSN SSSTAEYHVR SRHAVIPVNN RYRSAVVFEF 240
  241 RKQLQRKHNV FAMVWLVDLE DNVEQNIRVP IFTSSKPAHV LQNMIDFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1dqvA
Description:	Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #7

Region A:
Residues: [936-1055]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPDKESEFKI IGYLSTRICF HRGLDDSHEQ LVDNDDEAAI FETYRCLKSM GLRRGYVKDM  60
   61 KNPLADQRAS LDESRETTTA SSKFESDDSV DTEDEETTTD RTPIECTQTV SMVDPNVNGD 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1056-1188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQGRNSLGTM NSNERNLEQE FISLGYASKN RPKAHAQEGT NQPGASENVE PVLADDSDAV  60
   61 TIHSNISSDD QKRKLVNADD RELEKRLHRG PYNSKIVRTG EWVKDGAKMG WRNLRRKFAL 120
  121 NGRQPDVETE ISK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits