YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC869.02c
Organism:	Schizosaccharomyces pombe
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC869.02c.

Description	E-value	Query Range	Subject Range
HMP_VIBPA - Flavohemoprotein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=hmp PE=3 SV=2 HMP_VIBPA - Flavohemoprotein OS=Vibrio parahaemolyticus GN=hmp PE=3 SV=2	259.0	[0..31]	[425..2]
gi\|91188596, gi\|... - gi\|91227446\|ref\|ZP_01261810.1\| flavohemoprotein (flavohemoglobin) [Vibrio alginolyticus 12G01], gi\|9...	259.0	[0..31]	[425..2]
gi\|507738 - gi\|507738\|gb\|AAA62190.1\| Hmp	258.0	[0..31]	[425..2]
HMP_VIBVU - Flavohemoprotein OS=Vibrio vulnificus GN=hmp PE=3 SV=1 HMP_VIBVU - Flavohemoprotein OS=Vibrio vulnificus (strain CMCP6) GN=hmp PE=3 SV=1	255.0	[0..31]	[425..2]
HMP_VIBVY - Flavohemoprotein OS=Vibrio vulnificus (strain YJ016) GN=hmp PE=3 SV=1	255.0	[0..31]	[425..2]
gi\|75855424, gi\|... - gi\|75855424\|ref\|ZP_00763075.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...	254.0	[0..31]	[425..2]
gi\|197334385, gi... - gi\|197334385\|ref\|YP_002157112.1\| globin domain protein [Vibrio fischeri MJ11], gi\|197315875\|gb\|ACH65... gi\|59481024, gi\|... - gi\|59712923\|ref\|YP_205699.1\| nitric oxide dioxygenase [Vibrio fischeri ES114], gi\|59481024\|gb\|AAW868...	254.0	[0..31]	[425..2]
gi\|114195409, gi... - gi\|115387639\|ref\|XP_001211325.1\| bacterial hemoglobin [Aspergillus terreus NIH2624], gi\|114195409\|gb...	249.0	[0..30]	[424..2]
gi\|90324473, gi\|... - gi\|90414468\|ref\|ZP_01222444.1\| putative Flavodoxin reductase [Photobacterium profundum 3TCK], gi\|903...	248.0	[0..32]	[425..3]
gi\|52002629, gi\|... - gi\|52784778\|ref\|YP_090607.1\| Hmp [Bacillus licheniformis ATCC 14580], gi\|52347280\|gb\|AAU39914.1\| Hmp...	248.0	[0..31]	[425..2]

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Predicted Domain #1

Region A:
Residues: [1-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVEVNREN ADVANTNRQA NLAEGYEIKE LNESQKQYIR SSIPILESSG VNLTKAFYQK  60
   61 MLGNYPEVLP YFNKAHQISL SQPRILAFAL LNYAKNIDDL TSLSAFMDQI VVKHVGLQIK 120
  121 AEHYPIVGHC LLSTMQELLP SDVATPAFLE AWTTAYGNLA KILIDSEKKV YQSQPWNGFV 180
  181 EFKVTELINE SSDVKSVYLG PKDPAFRISH AHPGQYVSVL WEIPGLSHKT LREYSLSNRV 240
  241 DTCRNQFRIS VRRVAGGVVS NFVHDNLKVG DIVGVSPPAG NFVYKRSEEN VNRPLLCFAG 300
  301 GIGITPLIPI IETALLDGRK VNFCYSSRNY VSRPFKQWLE QLKLKYKENL KLKEFFSEES 360
  361 SVTKEQIVDE VMTRIINEED LEKLDLSECD IYMLGPNNYM RFVKQELVKL GVEPNKVQSE 420
  421 FFGPYIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	1gvhA
Description:	Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxygen transporter activity	7.81281381234264	bayes_pls_golite062009
oxygen binding	3.78522064312431	bayes_pls_golite062009
hemoglobin binding	3.17505496298935	bayes_pls_golite062009
transporter activity	2.77225108027137	bayes_pls_golite062009
substrate-specific transporter activity	2.44807175467553	bayes_pls_golite062009
binding	1.56341797572673	bayes_pls_golite062009
catalytic activity	1.45374095556065	bayes_pls_golite062009
hemoglobin alpha binding	1.07662870695556	bayes_pls_golite062009
nitric-oxide synthase activity	0.943011064240739	bayes_pls_golite062009
transferase activity	0.708491789248912	bayes_pls_golite062009
riboflavin synthase activity	0.366634814975673	bayes_pls_golite062009
cofactor binding	0.365255270036622	bayes_pls_golite062009
oxidoreductase activity	0.27336340260908	bayes_pls_golite062009
coenzyme binding	0.270924422726986	bayes_pls_golite062009
protein binding	0.144900113694048	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: