YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3H7.03c
Organism:	Schizosaccharomyces pombe
Length:	1009 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3H7.03c.

Description	E-value	Query Range	Subject Range
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	966.0	[0..34]	[1008..1]
EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|217321828, gi... - gi\|217325607\|ref\|ZP_03441691.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|218360020, gi... - gi\|218553252\|ref\|YP_002386165.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI1], ... gi\|218364410, gi... - gi\|218557641\|ref\|YP_002390554.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli S88], g... gi\|218426083, gi... - gi\|218688519\|ref\|YP_002396731.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ED1a], ... EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|218350881, gi... - gi\|218694149\|ref\|YP_002401816.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 55989],... gi\|218699080, gi... - gi\|218699080\|ref\|YP_002406709.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI39],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|218704042, gi... - gi\|218704042\|ref\|YP_002411561.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli UMN026]... ODO1_ECO57 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1 gi\|75175924, gi\|... - gi\|75175924\|ref\|ZP_00696111.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75189747, gi\|... - gi\|75189747\|ref\|ZP_00703014.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|157160205, gi... - gi\|75194884\|ref\|ZP_00704954.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|194412889, gi... - gi\|75209706\|ref\|ZP_00709914.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75229642, gi\|... - gi\|75229642\|ref\|ZP_00716179.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|191174047, gi... - gi\|75237356\|ref\|ZP_00721398.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75256435, gi\|... - gi\|75256435\|ref\|ZP_00728093.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|188495881, gi... - gi\|75511613\|ref\|ZP_00734264.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|254591272, gi... - gi\|254791872\|ref\|YP_003076709.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli O... gi\|253972696, gi... - gi\|254160795\|ref\|YP_003043903.1\| alpha-ketoglutarate decarboxylase [Escherichia coli B str. REL606],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1 gi\|253325348, gi... - gi\|254287583\|ref\|YP_003053331.1\| alpha-ketoglutarate decarboxylase [Escherichia coli BL21(DE3)], gi\|... gi\|83585343, gi\|... - gi\|83585343\|ref\|ZP_00923990.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|168750657, gi... - gi\|188015214\|gb\|EDU53336.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|242376487, gi... - gi\|251784214\|ref\|YP_002998518.1\| hypothetical protein B21_00674 [Escherichia coli BL21], gi\|24237648... gi\|238859780, gi... - gi\|238899990\|ref\|YP_002925786.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli B... gi\|237707312, gi... - gi\|237707312\|ref\|ZP_04537793.1\| oxoglutarate dehydrogenase [Escherichia sp. 3_2_53FAA], gi\|226898522... gi\|227884308, gi... - gi\|227884308\|ref\|ZP_04002113.1\| oxoglutarate dehydrogenase (succinyl-transferring) [Escherichia coli... gi\|170080392, gi... - gi\|170080392\|ref\|YP_001729712.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli s... gi\|170519246, gi... - gi\|170681528\|ref\|YP_001742826.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... gi\|195939067 - gi\|195939067\|ref\|ZP_03084449.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 str. EC4... gi\|208726152, gi... - gi\|208806351\|ref\|ZP_03248688.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208816323, gi... - gi\|208816323\|ref\|ZP_03257502.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208737127, gi... - gi\|208822934\|ref\|ZP_03263252.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|115512043, gi... - gi\|117622919\|ref\|YP_851832.1\| alpha-ketoglutarate decarboxylase [Escherichia coli APEC O1], gi\|11551... gi\|209399395, gi... - gi\|209399395\|ref\|YP_002269349.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... ODO1_ECOLI - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) - Escheri... gi\|124501513, gi... - gi\|124526819\|ref\|ZP_01698701.1\| 2-oxoglutarate dehydrogenase, E1 subunit [Escherichia coli B], gi\|12... gi\|209917976, gi... - gi\|209917976\|ref\|YP_002292060.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli SE11], ... gi\|89107583, gi\|... - gi\|89107583\|ref\|AP_001363.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli str. ... gi\|189355772, gi... - gi\|189355772\|gb\|EDU74191.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|91209759, gi\|... - gi\|91209759\|ref\|YP_539745.1\| alpha-ketoglutarate decarboxylase [Escherichia coli UTI89], gi\|91071333... gi\|168764007, gi... - gi\|189365909\|gb\|EDU84325.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|13360209, gi\|... - gi\|15830005\|ref\|NP_308778.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli O157:H7 str... gi\|189363590, gi... - gi\|189363590\|gb\|EDU82009.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|110342526, gi... - gi\|110640934\|ref\|YP_668662.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 536], gi\|1... gi\|187767229, gi... - gi\|187767229\|gb\|EDU31073.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168779209, gi... - gi\|189002698\|gb\|EDU71684.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168786879, gi... - gi\|189372978\|gb\|EDU91394.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|189376465, gi... - gi\|189376465\|gb\|EDU94881.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|170020930, gi... - gi\|170020930\|ref\|YP_001725884.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ATCC 87...	966.0	[0..34]	[1008..1]
gi\|24111998, gi\|... - gi\|24111998\|ref\|NP_706508.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 301], gi\|2... gi\|30040356, gi\|... - gi\|30062111\|ref\|NP_836282.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 2457T], gi...	966.0	[0..34]	[1008..1]
gi\|193070663, gi... - gi\|75234496\|ref\|ZP_00718843.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	965.0	[0..34]	[1008..1]
gi\|110804647, gi... - gi\|110804647\|ref\|YP_688167.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 5 str. 8401], gi\|...	965.0	[0..34]	[1008..1]
gi\|81240142, gi\|... - gi\|82775994\|ref\|YP_402341.1\| alpha-ketoglutarate decarboxylase [Shigella dysenteriae Sd197], gi\|8124...	965.0	[0..34]	[1008..1]
gi\|43019 - gi\|43019\|emb\|CAA25280.1\| unnamed protein product [Escherichia coli] gi\|146201 - gi\|146201\|gb\|AAA23897.1\| 2-oxoglutarate dehydrogenase [Escherichia coli K12]	963.0	[0..34]	[1008..1]
gi\|15800430, gi\|... - gi\|15800430\|ref\|NP_286442.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 EDL933], gi... gi\|25284469 - gi\|25284469\|pir\|\|F85573 hypothetical protein sucA [imported] - Escherichia coli (strain O157:H7, su...	962.0	[0..34]	[1008..1]
gi\|73854727, gi\|... - gi\|74311250\|ref\|YP_309669.1\| alpha-ketoglutarate decarboxylase [Shigella sonnei Ss046], gi\|73854727\|...	962.0	[0..34]	[1008..1]
gi\|224467078, gi... - gi\|224582551\|ref\|YP_002636349.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|200389929, gi... - gi\|200389929\|ref\|ZP_03216540.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|194444060, gi... - gi\|194444060\|ref\|YP_002039973.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|62179310, gi\|... - gi\|62179310\|ref\|YP_215727.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|161615038, gi... - gi\|161615038\|ref\|YP_001589003.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enter...	957.0	[0..34]	[1008..1]

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Predicted Domain #1

Region A:
Residues: [1-1009]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFIPSSAK ARALRRSAVT AYRLNRLTCL SSLQQNRTFA TQPTDDFLTG GAADYVDEMY  60
   61 DAWKKDPNSV HASWQAYFKN VQERGVSPSK AFQAPPLLDY ADSYTALDSS LINGNNYADI 120
  121 DVGIYMKVQL LVRAYQSRGH HLAKLDPLGI NVNHNRPSEL TLEHYGFTES DLNRTIHLGP 180
  181 GILPNFREAG RKTMTLREIV ETCEKIYCGS FAVEFTHISS RKRSNWILSH LETPTPFRYS 240
  241 HDQKIMIFDR LSWADSFERF LFTKFPNDKR FGLEGCEAMV PGMKALIDRS VDEGISNIVI 300
  301 GMAHRGRLNL LHNIVRKPAQ AIFSEFRGTQ DPDDEGSGDV KYHLGMNYQR PTPSGKRVSL 360
  361 SLVANPSHLE AEDPVVLGKV RAIQHYTSDE ASHEQSMGIL IHGDAAFAAQ GVVYETFGLH 420
  421 ALPGYSTGGT VHIVINNQIG FTTDPRFARS TPYCTDIAKS MEAPIFHVNG DDVEAVTFIC 480
  481 QLAADWRKAF KTDVVVDIVC YRRHGHNETD QPSFTQPRMY KAIAKHPPTF KIYTQQLLQE 540
  541 KTVSKAEVDA QEKRVWDILE SSFESSKNYK SDHREWLSNP WVGFASPKDL MTKILPSYPT 600
  601 GVNIDTLKQI GKALYTLPEG FDAHRNLKRI LNNRNKSISS GEGIDMPTAE ALAFGTLLEE 660
  661 GHHVRVSGQD VERGTFSQRH AVLHDQSSEN VYIPLNHLSP NQASFVIRNS SLSEYGVLGF 720
  721 EYGYSLSSPN ALVVWEAQFG DFANNAQCII DQFIAAGETK WLQRTGIVLS LPHGYDGQGP 780
  781 EHSSARMERY LQLCNEDPRE FPSEEKLQRQ HQDCNIQAIY VTKPSQYFHA LRRNIHRQFR 840
  841 KPLVIFFSKS LLRHPAARST IDEFDEKHGF KLILEEEEHG KSILPPEKIE KLIICSGQVW 900
  901 VALSKAREEN KIDNIAITRV EQLHPFGWKQ MAANISQYPN LKEIIWCQEE PLNAGAWTYM 960
  961 EPRIYTILKH LGRDLPVRYA GRPPSASVAA GNKQQHLAEQ EQFLNDALL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits