YRC Public Data Repository - Protein Structure Prediction

Protein:	coq10
Organism:	Schizosaccharomyces pombe
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq10.

Description	E-value	Query Range	Subject Range
gi\|85711976, gi\|... - gi\|85711976\|ref\|ZP_01043030.1\| Oligoketide cyclase/lipid transport protein, putative [Idiomarina bal...	171.0	[0..10]	[157..1]
gi\|56460005, gi\|... - gi\|56460005\|ref\|YP_155286.1\| oligoketide cyclase/lipid transport protein, putative [Idiomarina loihi...	171.0	[0..10]	[158..1]
gi\|21959995, gi\|... - gi\|22126954\|ref\|NP_670377.1\| hypothetical protein y3078 [Yersinia pestis KIM], gi\|21959995\|gb\|AAM866... gi\|45435746, gi\|... - gi\|45440888\|ref\|NP_992427.1\| hypothetical protein YP_1054 [Yersinia pestis biovar Microtus str. 9100...	169.0	[0..6]	[156..31]
gi\|67084600, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], gi... gi\|67158727, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], re...	168.0	[0..12]	[157..4]
gi\|77974742 - gi\|77974742\|ref\|ZP_00830281.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia freder...	167.0	[0..10]	[156..1]
gi\|153947960, gi... - gi\|77632095\|ref\|ZP_00794681.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pseudo...	167.0	[0..10]	[156..1]
gi\|238796718, gi... - gi\|77963357\|ref\|ZP_00827167.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia mollar...	166.0	[0..10]	[156..1]
gi\|229697403, gi... - gi\|229841037\|ref\|ZP_04461196.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229689488, gi... - gi\|229843141\|ref\|ZP_04463287.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229893979, gi... - gi\|229893979\|ref\|ZP_04509165.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703864\|gb\|EEO... gi\|149291272, gi... - gi\|149366898\|ref\|ZP_01888932.1\| hypothetical protein YPE_2152 [Yersinia pestis CA88-4125], gi\|149291... gi\|165924650, gi... - gi\|165924650\|ref\|ZP_02220482.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|145211556, gi... - gi\|145599860\|ref\|YP_001163936.1\| hypothetical protein YPDSF_2595 [Yersinia pestis Pestoides F], gi\|1... gi\|229903497, gi... - gi\|229903497\|ref\|ZP_04518610.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679267\|gb\|EEO753... gi\|77636439, gi\|... - gi\|77636439\|ref\|ZP_00798513.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|89105213, gi\|... - gi\|89105213\|ref\|ZP_01177737.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|108806577, gi... - gi\|108806577\|ref\|YP_650493.1\| hypothetical protein YPA_0580 [Yersinia pestis Antiqua], gi\|108778490\|... Q66DB3\|Q66DB3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|166211450, gi... - gi\|166211450\|ref\|ZP_02237485.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|165989480, gi... - gi\|166011532\|ref\|ZP_02232430.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|167419468, gi... - gi\|167419468\|ref\|ZP_02311221.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|167400072, gi... - gi\|167400072\|ref\|ZP_02305590.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|51595480, gi\|... - gi\|51595480\|ref\|YP_069671.1\| hypothetical protein YPTB1136 [Yersinia pseudotuberculosis IP 32953], g... gi\|170025201, gi... - gi\|170025201\|ref\|YP_001721706.1\| hypothetical protein YPK_2979 [Yersinia pseudotuberculosis YPIII], ... gi\|25348179 - pir\|\|AF0135 conserved hypothetical protein YPO1102 [imported] - Yersinia pestis (strain CO92) gi\|167057147, gi... - gi\|167424298\|ref\|ZP_02316051.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Mediae... gi\|115346881, gi... - gi\|218928270\|ref\|YP_002346145.1\| hypothetical protein YPO1102 [Yersinia pestis CO92], gi\|16121402\|re... gi\|186894533, gi... - gi\|186894533\|ref\|YP_001871645.1\| hypothetical protein YPTS_1213 [Yersinia pseudotuberculosis PB1/+],...	166.0	[0..10]	[156..1]
gi\|50119780, gi\|... - gi\|50119780\|ref\|YP_048947.1\| hypothetical protein ECA0837 [Pectobacterium atrosepticum SCRI1043], gi...	166.0	[0..10]	[156..1]
gi\|116052914, gi... - gi\|53726414\|ref\|ZP_00347572.1\| COG2867: Oligoketide cyclase/lipid transport protein [Pseudomonas aer...	165.0	[0..12]	[157..4]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRCTLRRL ECYRASRLMP YKPSFLFSLI SNVNEYERFV PFCQKSKVTE YDPKTGYPTK  60
   61 ADLTVGFKGL CETFDSKVVC DPVALTVLAD ASHHRLFRRL KTHWSIEEAS RGRVRVDLEV 120
  121 DFEFASKLHG MMSKFVGSSV ASEIIQGFVQ QAKIKHKLES ENEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.453951550198712	bayes_pls_golite062009
catalytic activity	0.0116392906163881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: