YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC36.10
Organism:	Schizosaccharomyces pombe
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC36.10.

Description	E-value	Query Range	Subject Range
PLD3B_RAT - PRELI domain containing protein 3B OS=Rattus norvegicus GN=Prelid3b PE=1 SV=1	239.0	[0..1]	[178..1]
gi\|73992400 - gi\|73992400\|ref\|XP_534469.2\| PREDICTED: similar to Protein C20orf45 isoform 1 [Canis familiaris]	238.0	[0..1]	[178..1]
gi\|7705610, gi\|4... - gi\|7705610\|ref\|NP_057129.1\| hypothetical protein LOC51012 [Homo sapiens], gi\|4929683\|gb\|AAD34102.1\|A...	237.0	[0..1]	[178..1]
PLD3B_CRIGR - PRELI domain containing protein 3B OS=Cricetulus griseus GN=PRELID3B PE=2 SV=1	237.0	[0..1]	[178..1]
PLD3B_BOVIN - PRELI domain containing protein 3B OS=Bos taurus GN=PRELID3B PE=2 SV=1	236.0	[0..1]	[178..1]
PLD3B_MACFA - PRELI domain containing protein 3B OS=Macaca fascicularis GN=PRELID3B PE=2 SV=1	236.0	[0..1]	[178..1]
PLD3B_MOUSE - PRELI domain containing protein 3B OS=Mus musculus GN=Prelid3b PE=1 SV=2	236.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFESCHLF QYPFEQVSAA HWQKYPNEHA THVIAVDTLD RKVLDNGVLY TERLITCHQA  60
   61 LPRWILKLID GAQDCYIRET SYVDLKARTL TLLTSNLTFS DRLRVDETVT YSPHPELEAT 120
  121 VFQQEARIEA LACMKRLSNL IEQWSVDGFG KKASRGKEGF ESVLEKINMS VFQTRPFGSS 180
  181 EATA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.958607
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits