YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC28F2.05c
Organism:	Schizosaccharomyces pombe
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC28F2.05c.

Description	E-value	Query Range	Subject Range
gi\|56378939, gi\|... - gi\|56419097\|ref\|YP_146415.1\| plant-metabolite dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56...	292.0	[0..6]	[275..9]
gi\|116062059 - gi\|116062059\|dbj\|BAF34662.1\| aldo-keto reductase type L23 [Meriones unguiculatus]	287.0	[0..2]	[276..5]
gi\|89097650, gi\|... - gi\|89097650\|ref\|ZP_01170538.1\| YvgN [Bacillus sp. NRRL B-14911], gi\|89087509\|gb\|EAR66622.1\| YvgN [Ba...	287.0	[0..1]	[275..5]
gi\|48870271, gi\|... - gi\|48870271\|ref\|ZP_00322996.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [P...	284.0	[0..4]	[275..7]
gi\|23097990, gi\|... - gi\|23097990\|ref\|NP_691456.1\| oxidoreductase [Oceanobacillus iheyensis HTE831], gi\|22776214\|dbj\|BAC12...	284.0	[0..1]	[270..1]
gi\|56963875, gi\|... - gi\|56963875\|ref\|YP_175606.1\| oxidoreductase [Bacillus clausii KSM-K16], gi\|56910118\|dbj\|BAD64645.1\| ...	281.0	[0..1]	[270..1]
gi\|89151284, gi\|... - gi\|89200682\|ref\|ZP_01179433.1\| 2,5-didehydrogluconate reductase [Bacillus cereus subsp. cytotoxis NV...	281.0	[0..1]	[275..6]
gi\|165871533, gi... - gi\|165871533\|ref\|ZP_02216179.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|228931697, gi... - gi\|228931697\|ref\|ZP_04094602.1\| YtbE (Aldo/keto reductase YtbE) [Bacillus thuringiensis serovar anda... gi\|167530510, gi... - gi\|167634196\|ref\|ZP_02392518.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|227812869, gi... - gi\|227812869\|ref\|YP_002812878.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str.... gi\|167511749, gi... - gi\|167640347\|ref\|ZP_02398612.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|170668284, gi... - gi\|170687757\|ref\|ZP_02878972.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|47500602, gi\|... - gi\|47525454\|ref\|YP_016803.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. 'Ame... gi\|170707850, gi... - gi\|170707850\|ref\|ZP_02898300.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|30253703, gi\|... - gi\|30260382\|ref\|NP_842759.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. Ames... gi\|172081423, gi... - gi\|177653383\|ref\|ZP_02935593.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|65317637, gi\|... - gi\|65317637\|ref\|ZP_00390596.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [B... gi\|190561558, gi... - gi\|190567431\|ref\|ZP_03020345.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis Tsian... gi\|218901397, gi... - gi\|218901397\|ref\|YP_002449231.1\| oxidoreductase, aldo/keto reductase family [Bacillus cereus AH820],... gi\|254756908 - gi\|254756908\|ref\|ZP_05208936.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254754860 - gi\|254754860\|ref\|ZP_05206895.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254739764 - gi\|254739764\|ref\|ZP_05197457.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|49183230, gi\|... - gi\|49183230\|ref\|YP_026482.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. Ster... gi\|254734982 - gi\|254734982\|ref\|ZP_05192694.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254723618 - gi\|254723618\|ref\|ZP_05185405.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254686541 - gi\|254686541\|ref\|ZP_05150400.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|229268007, gi... - gi\|229603599\|ref\|YP_002864838.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str.... gi\|229119857, gi... - gi\|229119857\|ref\|ZP_04249117.1\| YtbE (Aldo/keto reductase YtbE) [Bacillus cereus 95/8201], gi\|228663...	281.0	[0..5]	[275..10]
gi\|74494062, gi\|... - gi\|75758435\|ref\|ZP_00738557.1\| Aldo/keto reductase family [Bacillus thuringiensis serovar israelensi... gi\|228860692, gi... - gi\|228898939\|ref\|ZP_04063218.1\| YtbE (Aldo/keto reductase YtbE) [Bacillus thuringiensis IBL 4222], g...	280.0	[0..5]	[275..10]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPFSPSQTN FEKEQLCFGV YQLKDCYQQV IEALSLGIRV IDSAITYRNE KECEQAIQDF  60
   61 CHQNVNIKRE DITLITKIPD SLQGFERTWK AVEQSLRRTG RPKLDVVLIH SPKWPVRRIE 120
  121 SWRALLQHQK EGRINKIGVS NYNIHHLEEI ISLGLPLPAI NQVEFSAFNN RPTFLSYCFN 180
  181 HGILVQAFSP LTRGYRLSDI RLLDLSLKYN KTPANILLRY CLQKGVSPIF KASSFVHIHE 240
  241 NVKAEQFMLD PSDMDVMDTW DEEFVSKPTW NPIILP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1vbjA
Description:	The crystal structure of prostaglandin F synthase from Trypanosoma brucei
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits