YRC Public Data Repository - Protein Structure Prediction

Protein:	apm1
Organism:	Schizosaccharomyces pombe
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apm1.

Description	E-value	Query Range	Subject Range
gi\|42554497, gi\|... - gi\|46130854\|ref\|XP_389158.1\| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi\|42554497\|gb\|E...	552.0	[0..1]	[420..1]
gi\|28949965 - gi\|28949965\|emb\|CAD70726.1\| probable clathrin assembly protein AP47 [Neurospora crassa]	549.0	[0..1]	[420..1]
gi\|119183349, gi... - gi\|90301509\|gb\|EAS31140.1\| hypothetical protein CIMG_06619 [Coccidioides immitis RS], gi\|119183349\|r...	542.0	[0..1]	[420..1]
gi\|70997882, gi\|... - gi\|70997882\|ref\|XP_753673.1\| AP-1 adaptor complex subunit mu [Aspergillus fumigatus Af293], gi\|66851... gi\|159126594 - gi\|159126594\|gb\|EDP51710.1\| AP-1 adaptor complex subunit mu, putative [Aspergillus fumigatus A1163]	536.0	[0..1]	[420..1]
gi\|111060420, gi... - gi\|169615757\|ref\|XP_001801294.1\| hypothetical protein SNOG_11041 [Phaeosphaeria nodorum SN15], gi\|11...	533.0	[0..1]	[420..1]
gi\|157126991, gi... - gi\|157126991\|ref\|XP_001661031.1\| clathrin coat assembly protein ap-1 [Aedes aegypti], gi\|108873063\|g...	530.0	[0..3]	[425..4]
gi\|116122839, gi... - gi\|118789988\|ref\|XP_317947.3\| ENSANGP00000020532 [Anopheles gambiae str. PEST], gi\|116122839\|gb\|EAA1...	529.0	[0..3]	[425..2]
gi\|73986092 - gi\|73986092\|ref\|XP_865884.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i...	529.0	[0..3]	[425..4]
gi\|78191071 - gi\|78191071\|gb\|ABB29860.1\| AP-1 mu subunit [Cryphonectria parasitica]	528.0	[0..1]	[420..1]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAIFVLNL KGKVIISRDY RADIPMSVVE KFLPLKSEVE EEQGFSTPCL THEGINYIYI  60
   61 HHNDVYLLAL SKMNSDAMEM LVFLRKMADV FIDYFKELQE ESIRDNFVLV YELLDEIMDF 120
  121 GFPQTTETKI LQEYITQTSN TVKKHAPPPI AMTNAISWRS EGIHYRKNEV FLDVIESVNL 180
  181 IAAADGTVIQ SEILGKVRLK CYLSGMPELR LGLNDKVLFE AAGRTIKGNT VEMEDVKFHQ 240
  241 CVRLARFEND RTISFIPPDG EFDLMSYRMS SNVRPLIWVE CESIVHSGSR IEFMVKAKAQ 300
  301 FKKRCIANNV QIIIPVPEDA DSPRFQTSNG HVQYAPEQAA MVWNIKKFAG GKEFFMRAEM 360
  361 GLPSVKNEDI QVQKKRPVQL KFAIPYFTTS GIQVRYLKIT EPKLNYHAMP WVRYVTQNGT 420
  421 EYSIRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	148.0
Match:	1w63M
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits