YRC Public Data Repository - Protein Structure Prediction

Protein:	tpx1
Organism:	Schizosaccharomyces pombe
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tpx1.

Description	E-value	Query Range	Subject Range
PRDX2_CRIGR - Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3	250.0	[0..3]	[192..6]
gi\|62901916 - gi\|62901916\|gb\|AAY18909.1\| thioredoxin peroxidase 1-like [synthetic construct]	250.0	[0..3]	[192..30]
gi\|60818622, gi\|... - gi\|61362999\|gb\|AAX42317.1\| peroxiredoxin 2 [synthetic construct], gi\|60818622\|gb\|AAX36471.1\| peroxir... PRDX2_MACFA - Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3 gi\|114675617 - gi\|114675617\|ref\|XP_524127.2\| PREDICTED: peroxiredoxin 2 [Pan troglodytes] gi\|109123563, gi... - gi\|109123563\|ref\|XP_001109216.1\| PREDICTED: peroxiredoxin 2 isoform 5 [Macaca mulatta], gi\|109123561... PRDX2 - peroxiredoxin 2	250.0	[0..3]	[192..6]
gi\|51980440 - gb\|AAH82149.1\| Unknown (protein for MGC:98395) [Xenopus laevis] PRDX2_MOUSE - Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3	250.0	[0..3]	[192..6]
gi\|149037815, gi... - gi\|34849738\|gb\|AAH58481.1\| Peroxiredoxin 2 [Rattus norvegicus], gi\|149037815\|gb\|EDL92175.1\| rCG51106...	249.0	[0..3]	[192..6]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQIGKPAP DFKGTAVVNG AFEEIKLADY KGKWVFLGFY PLDFTFVCPT EIVAFSEAAS  60
   61 KFAERNAQVI LTSTDSEYSH LAFINTPRKE GGLGGINIPL LADPSHKVSR DYGVLIEDAG 120
  121 VAFRGLFLID PKGVLRQITI NDLPVGRSVD EALRLLDAFQ FVEEHGEVCP ANWHKGSDTI 180
  181 DTKNPEKYFS KH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1qmvA
Description:	Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits