YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.08c
Organism:	Schizosaccharomyces pombe
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.08c.

Description	E-value	Query Range	Subject Range
gi\|44983988 - gi\|44983988\|gb\|AAS52998.1\| AER318Cp [Ashbya gossypii ATCC 10895] gi\|44983988, gi\|... - gi\|45190920\|ref\|NP_985174.1\| AER318Cp [Ashbya gossypii ATCC 10895], gi\|44983988\|gb\|AAS52998.1\| AER31...	401.0	[0..3]	[433..2]
gi\|190404626 - gi\|190404626\|gb\|EDV07893.1\| transcriptional adapter 2 [Saccharomyces cerevisiae RM11-1a] ADA2_YEAST - Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADA2 PE=1 SV=1 gi\|151942413 - gi\|151942413\|gb\|EDN60769.1\| Ada histone acetyltransferase complex component [Saccharomyces cerevisia... gi\|207346269 - gi\|207346269\|gb\|EDZ72816.1\| YDR448Wp-like protein [Saccharomyces cerevisiae AWRI1631] ADA2 - Transcription coactivator, component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyl...	398.0	[0..3]	[433..2]
ADA2_CANAL - Transcriptional adapter 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADA2 PE=3 SV=1 orf19.9867, orf1... - ADA2 CGDID:CAL0000716 Assembly 19, Contig19-10146 (55275, 56612) CDS, translated using codon table 1...	397.0	[0..6]	[434..8]
gi\|40882161 - gi\|40882161\|emb\|CAF05987.1\| related to transcription adaptor ADA2 [Neurospora crassa]	378.0	[0..3]	[433..16]
gi\|18101632 - gi\|18101632\|gb\|AAL14200.2\| transcriptional adaptor-like protein [Hypocrea jecorina]	378.0	[0..3]	[435..16]
gi\|49657836, gi\|... - gi\|50427117\|ref\|XP_462166.1\| hypothetical protein DEHA0G15378g [Debaryomyces hansenii CBS767], gi\|49...	375.0	[0..6]	[432..8]
gi\|49527804, gi\|... - gi\|50292119\|ref\|XP_448492.1\| unnamed protein product [Candida glabrata], gi\|49527804\|emb\|CAG61453.1\|... gi\|49527804 - gi\|49527804\|emb\|CAG61453.1\| unnamed protein product [Candida glabrata]	375.0	[0..3]	[433..2]
gi\|50303311, gi\|... - gi\|50303311\|ref\|XP_451597.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640729\|emb\|CAH0199... gi\|49640729 - gi\|49640729\|emb\|CAH01990.1\| KLLA0B01496p [Kluyveromyces lactis]	375.0	[0..3]	[433..2]
gi\|50556010, gi\|... - gi\|50556010\|ref\|XP_505413.1\| YALI0F14443p [Yarrowia lipolytica], gi\|49651283\|emb\|CAG78222.1\| unnamed... gi\|49651283 - gi\|49651283\|emb\|CAG78222.1\| YALI0F14443p [Yarrowia lipolytica]	373.0	[0..5]	[434..6]
gi\|115384656, gi... - gi\|115384656\|ref\|XP_001208875.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	372.0	[0..3]	[433..16]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPQKYHCNV CAQDITRSIH IRCVECVDFD LCIPCFTSGA SLGTHHPSHP YRIIETNSYP  60
   61 IF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	2e5rA
Description:	No description for 2e5rA was found.

Predicted Domain #2

Region A:
Residues: [63-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DENWGADEEL LLIDACETLG LGNWADIADY VGNARTKEEC RDHYLKTYIE SDCYPLASVE  60
   61 LPGPVDRIAF AARKRARIEA FQPPPIIPQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	2elkA
Description:	No description for 2elkA was found.

Predicted Domain #3

Region A:
Residues: [153-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLASTPQCHE IQGYMPGRLE FDQEYMNEAE LPIKDMNFDD DLHESAKHEM QLKLTMLNIY  60
   61 NSRLTRRAVR KQTIFNHNLL DYRRLQANEK RMSKEERNLL NKTKAFARLL TGPDYQKFVN 120
  121 SYHEQITLKK QISDLQEWRQ MGLTTLEQGH KYERDKTQKF LLSKASASYD KQLRHVKSFN 180
  181 QTTSAPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [340-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVRDIQKIVP RKPATPTMFS ASADRQLLSE DEQALCSKLQ IFPKPFLALK FALISASLTS  60
   61 KKPFQKTDAV NLFKHLDANK VEQVYDFFHN ARWIGAPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2eljA
Description:	No description for 2eljA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits