YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP16F5.08c
Organism:	Schizosaccharomyces pombe
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP16F5.08c.

Description	E-value	Query Range	Subject Range
gi\|109158090, gi... - gi\|109158097\|pdb\|2GVC\|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.P...	198.0	[0..4]	[447..4]
gi\|148260619, gi... - gi\|88940152\|ref\|ZP_01145593.1\| Dihydrolipoamide dehydrogenase [Acidiphilium cryptum JF-5], gi\|889210...	191.0	[0..3]	[427..1]
gi\|114537206, gi... - gi\|114707325\|ref\|ZP_01440222.1\| dihydrolipoamide dehydrogenase [Fulvimarina pelagi HTCC2506], gi\|114...	188.0	[0..2]	[426..4]
gi\|48853406 - gi\|48853406\|ref\|ZP_00307577.1\| COG1249: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam... gi\|110282410, gi... - gi\|110639729\|ref\|YP_679939.1\| dihydrolipoyl dehydrogenanse [Cytophaga hutchinsonii ATCC 33406], gi\|1...	188.0	[0..7]	[427..2]
gi\|48831907, gi\|... - gi\|69259929\|ref\|ZP_00607774.1\| Dihydrolipoamide dehydrogenase [Magnetococcus sp. MC-1], gi\|68245680\|...	187.0	[0..3]	[427..1]
gi\|25284939 - pir\|\|AD3270 dihydrolipoamide dehydrogenase (EC 1.8.1.4) [imported] - Brucella melitensis (strain 16M... gi\|17982024, gi\|... - gi\|17986429\|ref\|NP_539063.1\| dihydrolipoamide dehydrogenase [Brucella melitensis 16M], gi\|17982024\|g...	186.0	[0..7]	[426..3]
gi\|167620236 - gi\|167620236\|ref\|ZP_02388867.1\| dihydrolipoamide dehydrogenase [Burkholderia thailandensis Bt4] gi\|167582076 - gi\|167582076\|ref\|ZP_02374950.1\| dihydrolipoamide dehydrogenase [Burkholderia thailandensis TXDOH] gi\|83654784, gi\|... - gi\|83720959\|ref\|YP_443071.1\| dihydrolipoamide dehydrogenase [Burkholderia thailandensis E264], gi\|83...	185.0	[0..3]	[427..1]
gi\|88713490, gi\|... - gi\|88713490\|ref\|ZP_01107572.1\| Dihydrolipoyl dehydrogenase [Flavobacteriales bacterium HTCC2170], gi...	184.0	[0..5]	[430..2]
gi\|91686953, gi\|... - gi\|91782999\|ref\|YP_558205.1\| dihydrolipoamide dehydrogenase [Burkholderia xenovorans LB400], gi\|9168...	184.0	[0..3]	[428..1]

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Predicted Domain #1

Region A:
Residues: [1-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLPTIRKIA IIGAGPSGLV TAKALLAEKA FDQVTLFERR GSPGGVWNYT STLSNKLPVP  60
   61 STNPILTTEP IVGPAALPVY PSPLYRDLQT NTPIELMGYC DQSFKPQTLQ FPHRHTIQEY 120
  121 QRIYAQPLLP FIKLATDVLD IEKKDGSWVV TYKGTKAGSP ISKDIFDAVS ICNGHYEVPY 180
  181 IPNIKGLDEY AKAVPGSVLH SSLFREPELF VGESVLVVGG ASSANDLVRH LTPVAKHPIY 240
  241 QSLLGGGDIQ NESLQQVPEI TKFDPTTREI YLKGGKVLSN IDRVIYCTGY LYSVPFPSLA 300
  301 KLKSPETKLI DDGSHVHNVY QHIFYIPDPT LAFVGLALHV VPFPTSQAQA AFLARVWSGR 360
  361 LKLPSKEEQL KWQDELMFSL SGANNMYHSL DYPKDATYIN KLHDWCKQAT PVLEEEFPSP 420
  421 YWGEKERSIR ENMWSIRAKF FGIEPPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.221849
Match:	2gv8A
Description:	No description for 2gv8A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.56773888754354	bayes_pls_golite062009
antioxidant activity	1.49429830917872	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.39990343076756	bayes_pls_golite062009
oxidoreductase activity	0.44090433301056	bayes_pls_golite062009
binding	0.400596507621048	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: