YRC Public Data Repository - Protein Structure Prediction

Protein:	apm3
Organism:	Schizosaccharomyces pombe
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apm3.

Description	E-value	Query Range	Subject Range
gi\|42554497, gi\|... - gi\|46130854\|ref\|XP_389158.1\| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi\|42554497\|gb\|E...	473.0	[0..3]	[424..1]
gi\|28949965 - gi\|28949965\|emb\|CAD70726.1\| probable clathrin assembly protein AP47 [Neurospora crassa]	470.0	[0..3]	[424..1]
gi\|111060420, gi... - gi\|169615757\|ref\|XP_001801294.1\| hypothetical protein SNOG_11041 [Phaeosphaeria nodorum SN15], gi\|11...	464.0	[0..3]	[424..1]
gi\|148233900, gi... - gi\|66910694\|gb\|AAH97533.1\| MGC114659 protein [Xenopus laevis], gi\|148233900\|ref\|NP_001089449.1\| hypo...	464.0	[0..5]	[423..4]
gi\|89268628, gi\|... - gi\|89268628\|emb\|CAJ83030.1\| adaptor-related protein complex 1, mu 1 subunit [Xenopus tropicalis], gi...	463.0	[0..5]	[423..4]
gi\|56119012, gi\|... - gi\|56119012\|ref\|NP_001007887.1\| adaptor-related protein complex 1, mu 1 subunit [Gallus gallus], gi\|... gi\|542177093\|ref... - PREDICTED: AP-1 complex subunit mu-1 isoform X2 [Zonotrichia albicollis]	462.0	[0..5]	[423..4]
gi\|114675919 - gi\|114675919\|ref\|XP_001172758.1\| PREDICTED: adaptor-related protein complex 1, mu 1 subunit isoform ...	462.0	[0..5]	[423..4]
gi\|73986092 - gi\|73986092\|ref\|XP_865884.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i...	462.0	[0..5]	[423..4]
gi\|149757264 - gi\|149757264\|ref\|XP_001502865.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subun... AP1M1 - adaptor-related protein complex 1, mu 1 subunit gi\|109123796 - gi\|109123796\|ref\|XP_001112653.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subun... gi\|114675917, gi... - gi\|114675917\|ref\|XP_001172777.1\| PREDICTED: adaptor-related protein complex 1, mu 1 subunit isoform ... gi\|73986080 - gi\|73986080\|ref\|XP_852486.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i... AP1M1_BOVIN - AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3	462.0	[0..5]	[423..4]

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Predicted Domain #1

Region A:
Residues: [1-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIEAIYLV DTNGALLLQL ESRGRTSPIT LEHIKNELFR YKLRNEEPPF ILHNKNFLIF  60
   61 QELEEDVRLC IPTTCDTEPL YIHDIMRRIV DVVKTFFGGF NASKVEKNVC VIVQLLAEMI 120
  121 DYGYATCMEP NALQDIVPLP SFMNKFMAVT GLQTNTPTLA RDTVPWRTAK AKYATNEFFI 180
  181 HVLERVSAVY QPNGKLAFGT VKSDMECKCQ ISGMPLLLLS LRPGTKLGNV RFHQSVNLKR 240
  241 WKQHPDQIEF IPPDGKFTLA SFQTDFATQK SLPVVVEAKN KLDGRFEVRI RNTGKKSVEN 300
  301 LKILITIPQA LKSVTVTEGN YIFRASKYTH MEEGILEWSV KKLAWTSPAL VLTGFLAPLK 360
  361 KDANSTEESS SYSKLEHLDL QYKLQGSTLH NFKVESLKML NHPDKKSYKG VKHTIIAQNV 420
  421 SFRFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	1w63M
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits