YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC869.10c
Organism:	Schizosaccharomyces pombe
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC869.10c.

Description	E-value	Query Range	Subject Range
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	328.0	[0..2]	[550..110]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	328.0	[0..3]	[538..5]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	327.0	[0..1]	[550..79]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	326.0	[0..34]	[550..138]

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Predicted Domain #1

Region A:
Residues: [1-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKKALQYE ESKRAEEITD IELVSVGGID VEKKYGETKR ALKSRHVQLI AIGGCIGTGL  60
   61 FVGSGSALSE SGPASLFLSY VIMSFVIWTV MNALGEMCTY LPLSGASPIT YIERYVDASL 120
  121 AFAAGWNYWY AYVFLVASEV TAASIVIEYW TYAVPTAGWI AILLFLVAVL NSFFVKWFGE 180
  181 TEFWFAIIKV IAIVGLIILG VVIFFGGTPK HDRLGFRYWK HGLAFREYIV KGASGRFVGF 240
  241 WSAVIKSGFA FILAPELVIF SAGETEAPRR NIPKATSRFI YRLIFFYIFG SLTIGVITSS 300
  301 KDPRLLNAIS SGASGAAASP FVIGIQNAEI PVLNHIINAV ILTSACSSGN SFLFAGSRSI 360
  361 YSLAKEHQAP KIFKYCNRWG VPVISVAVTV LFACLAFLNA SASAAVVFNW FCNLSTISGF 420
  421 LAWICVLVAY LQFRKAMILN NLWETRPYKT PFQPYATYLT LFLLALITLT NGFTVFVGHT 480
  481 FTAGNFIAAY ITLPIFLVLY VAHKLWSRNW SFGKRIEEID VTTGVAEAEA LEQMYPAPVP 540
  541 RNIIEKIWFW IA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits