YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCPB1C11.02
Organism:	Schizosaccharomyces pombe
Length:	505 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCPB1C11.02.

Description	E-value	Query Range	Subject Range
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	298.0	[0..1]	[502..28]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	291.0	[0..4]	[504..1091]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	286.0	[0..14]	[499..145]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	282.0	[0..3]	[502..78]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	280.0	[0..3]	[500..67]
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	278.0	[0..11]	[416..970]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	278.0	[0..10]	[502..138]
gi\|114193530, gi... - gi\|115396644\|ref\|XP_001213961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	276.0	[0..1]	[501..1]

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Predicted Domain #1

Region A:
Residues: [1-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASVSLLPE GESLHRSLSA SQIQMLAFGG IIGTGLFLGI GSSLAESGPA SLLISFSVLG  60
   61 VSVYCTMLAL GEMSVYMPVA GSFCTYVGRY VDEALSFSLT WNYWLNDTIA LASHVLATRL 120
  121 VVDFWLIPTE GDPVSASLSL PPWKEAVRII TPITSLSANI ILNMLPVGGF GEIEYWLSSI 180
  181 KVFTVAAFIV NGILCNLGVN NEKKFIGFRY WKDPGAFNNG IIGVISSFVN AAFAYAGTES 240
  241 IALTAGEAKS PITTLPKAIR FTAHRVLLLY IISVLVVGIN LPYNTPGLDG DSVRMSPFTF 300
  301 VFKKFGVPGA ASIMNLVILS SALSAGNHSL YAGTRLLYSL AKSGHAPKVF SKCNKHGIPW 360
  361 LSVLATSATA ILCLMSSQAG KTWGFLLNVI AVSNQISWIF IAVSSLRFRK ALRVQGKTHR 420
  421 LYFPNWTYPV GPYIIILLNG VFLFLQGYKS LYPFRLSLFV SYYMEIPIVL GLYLIWKIYK 480
  481 KTKLVSSSEA DLETDWKSLE DTDSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.66
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits