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View Structure Prediction Details

Protein: ccq1
Organism: Schizosaccharomyces pombe
Length: 735 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccq1.

Description E-value Query
Range		 Subject
Range
MYH4_CANLF - Myosin-4 OS=Canis lupus familiaris GN=MYH4 PE=3 SV=1
 296.0 [0..5] [706..1267]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1
 296.0 [0..5] [706..1265]
gi|50757621 - gi|50757621|ref|XP_415581.1| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]
 296.0 [0..5] [708..1368]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1
 296.0 [0..5] [706..1267]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1
 295.0 [0..5] [706..1267]
gi|8250661 - gi|8250661|gb|AAB29713.2| myosin heavy chain [Rattus sp.]
 295.0 [0..1] [706..216]
MYH4_RABIT - Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 PE=1 SV=1
 295.0 [0..1] [706..1262]

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Predicted Domain #1
Region A:
Residues: [1-190] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEINDFTNS IIINESDTKY EVYSEVNSSN RWIAKEDCPS PLEDVWLLKL AGHKRKLEEP  60
   61 LSCMRNEEPA SKQREIEKFL RTDLDHSEND FLTQEVDEFP STQQLFPIPL QNDTAFDSSE 120
  121 ESITKSSKSS FSVLDIGLPM SALQRKMMHR LVQYFAFCID HFCTGPSDSR IQEKIRLFIQ 180
  181 SAHNIAKHPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-560] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYDTEVRNPS AAESTNSHVS LDASNFSSYA ENSSKFLFLQ ELFKNLSPSY SKTFFLFISN  60
   61 QFLANTLTQW LKSQNIDAEL WAEEDAKTSQ HPAIWICVSK KAPSASHFLQ SCPDLSATIF 120
  121 YDIEAYMSVT SSLPSIQSLV LRLIHLGSIE HAIKCFQSSY NASFLVNIVG VVATLSSSSE 180
  181 ENSEASNLST LFEKSGNFEE ILGSESHSSI TEKTRDIAKN VATWLKNGEN FSSWPLPPLM 240
  241 DLASLSVAEP RDSQPSVSQV NDTFVKSSDS TFPSSQSMQS PSKLHSLTSN ATDLLSSSSL 300
  301 KKNFFSQQEA DEVELSNNYD LQGAAVQYLQ RRLRMVEDEL HEAINSKNVQ QSRSEELEQQ 360
  361 ISKLTDNLQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [561-735] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRNTVRELKL DLEKSKKKNE DLSKLEVEKV EEIANLKKEL THLAKQQEFG FKYVQEFSNE  60
   61 DLQGKLIEAN EKNYKLTQLL KTQKEDADFI TNQYQNASTF AAEQSKEVAK LQAECKRLQA 120
  121 INSKVMEEVK VYNDSRVEAL LAKVSSLEET LKILEQKSLP KFTPHNQSPR IIDSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.30103
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle