YRC Public Data Repository - Protein Structure Prediction

Protein:	spc25
Organism:	Schizosaccharomyces pombe
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spc25.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	107.0	[0..5]	[221..1978]
gi\|50758470 - gi\|50758470\|ref\|XP_425393.1\| PREDICTED: similar to CCAAT displacement protein CDP [Gallus gallus]	99.0	[0..1]	[228..2254]
gi\|113420905 - gi\|113420905\|ref\|XP_376903.3\| PREDICTED: similar to Golgin subfamily A member 6 (Golgin linked to PM...	96.0	[0..1]	[235..685]
gi\|28925208, gi\|... - gi\|32413118\|ref\|XP_327039.1\| hypothetical protein [Neurospora crassa], gi\|28925208\|gb\|EAA34289.1\| hy... gi\|85110571 - gi\|85110571\|ref\|XP_963525.1\| hypothetical protein [Neurospora crassa OR74A]	95.0	[0..6]	[195..30]
gi\|55726896 - gi\|55726896\|emb\|CAH90207.1\| hypothetical protein [Pongo abelii] gi\|55726896\|emb\|... - hypothetical protein [Pongo pygmaeus]	95.0	[0..1]	[235..494]
gi\|94373372 - gi\|94373372\|ref\|XP_987712.1\| PREDICTED: similar to myosin, heavy polypeptide 13, skeletal muscle [Mu...	94.0	[0..1]	[234..678]
SPC25_GIBZE - Probable kinetochore protein SPC25 OS=Gibberella zeae GN=SPC25 PE=3 SV=2 SPC25_GIBZE - Probable kinetochore protein SPC25 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRR...	94.0	[0..5]	[231..27]
gi\|109110623 - gi\|109110623\|ref\|XP_001098655.1\| PREDICTED: similar to Golgin subfamily A member 6 (Golgin linked to...	93.0	[0..1]	[235..640]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLANFPTIE LDYDSLKSKI SNFNSIFDRF LQEERKKLLN NKNEYLRQLS EINEAQKKAE  60
   61 KSLEQTEARK QNFTELLEKE HEEQAITEQE IFSFQEKLDA MLKRKQKLSE ELDHYRAIIS 120
  121 SKRELRAQEM EAKRKQDSYN NPELKFWEDY LGLKMEGVHD EVIRFIFTNI DEKDWNKQFS 180
  181 FQINLAERDY KVVHCHPPLP HVDDLVNKVN RTRDFYQFLK DMRKGFRELH RKDLSQLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits