YRC Public Data Repository - Protein Structure Prediction

Protein:	ypt5
Organism:	Schizosaccharomyces pombe
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ypt5.

Description	E-value	Query Range	Subject Range
RAB1A_LYMST - Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1	226.0	[0..4]	[210..1]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	225.0	[0..7]	[210..1]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	224.0	[0..7]	[210..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	224.0	[0..7]	[210..1]
gi\|1053063 - gi\|1053063\|gb\|AAA80678.1\| small GTP-binding protein	224.0	[0..7]	[210..1]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	224.0	[0..4]	[210..53]
RIC1_ORYSJ - Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2 gi\|125526416 - gi\|125526416\|gb\|EAY74530.1\| hypothetical protein OsI_02420 [Oryza sativa Indica Group] RIC1_ORYSA - Ras-related protein RIC1 - Oryza sativa (Rice)	223.0	[0..7]	[210..1]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	223.0	[0..7]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNTAPKNV VTINQKLVLL GDSAVGKSSL VLRFVKDQFD DYRESTIGAA FLTQTLPIDE  60
   61 NTSVKLEIWD TAGQERYKSL APMYYRNANC AIVVYDITQA ASLEKAKSWI KELQRQAPEG 120
  121 IVIALAGNKL DLAQERRAVE KADAEAYAAE ANLLFFETSA KTAENVNELF TAIAKKLPLE 180
  181 DKLNQARGAV NRGVNLSEAR PAAQPSGSCS C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2heiA
Description:	No description for 2heiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits