YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB1A10.07c
Organism:	Schizosaccharomyces pombe
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB1A10.07c.

Description	E-value	Query Range	Subject Range
gi\|28436780 - gi\|28436780\|gb\|AAH46718.1\| TDE2 protein [Xenopus laevis]	548.0	[0..1]	[438..17]
gi\|55732883 - gi\|55732883\|emb\|CAH93133.1\| hypothetical protein [Pongo abelii] SERC3_PONAB - Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1	544.0	[0..1]	[438..1]
SERINC3 - serine incorporator 3 gi\|124000409, gi... - gi\|124000409\|gb\|ABM87713.1\| serine incorporator 3 [synthetic construct], gi\|123993433\|gb\|ABM84318.1\|...	540.0	[0..1]	[438..1]
gi\|109091875 - gi\|109091875\|ref\|XP_001110325.1\| PREDICTED: tumor differentially expressed protein 1 isoform 5 [Maca...	540.0	[0..1]	[438..1]
gi\|58332654, gi\|... - gi\|58332654\|ref\|NP_001011399.1\| tumor differentially expressed 2 [Xenopus (Silurana) tropicalis], gi...	539.0	[0..1]	[438..1]
gi\|114682112 - gi\|114682112\|ref\|XP_001152172.1\| PREDICTED: tumor differentially expressed protein 1 isoform 3 [Pan ...	538.0	[0..1]	[438..1]
gi\|28279601 - gi\|28279601\|gb\|AAH45456.1\| Serinc1 protein [Danio rerio]	537.0	[0..1]	[438..20]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVLSIPLA LASSLSGVVG IASSFLVTSV LSLTNSIQSN VGAVISYAVL YFVNSLLSWC  60
   61 MLSSWFNSKL SKLSAGYLQF DCQNDGKCYS VIAVHRLSFT LVMFHLFLAF ILSLCNTRSR 120
  121 VAIKIQNGLW PFKIVLWFVL GIFSFFIPTK FLSFWGNIIS VMGSALFIVY GLMLLVDFAH 180
  181 TWAERCVDRV LTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSSKFYLI GSTVGMYVVG LVLTILTYVF FCASSCSFNQ AINTINLLLC IAVSCLSVHP  60
   61 TIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [257-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYNPRSGLAQ SSMVMCYTCY LILSALANRP DEGQCNPWGN SASGTREFSK VIGAAFTFFT  60
   61 ILYSAVRAAS SRESDDSYSY LYADSHDMGV STPLEDGSSE EDKHQSDYNF IWFHIVFVLA 120
  121 AFYTASLLTN WN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [389-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTSVYENQKN DVFVRIGFSY AAVWVKIITS WVCHGLYVWS CLAPVFFPYR FMI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits