YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.02c
Organism:	Schizosaccharomyces pombe
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.02c.

Description	E-value	Query Range	Subject Range
gi\|125559024 - gi\|125559024\|gb\|EAZ04560.1\| hypothetical protein OsI_025792 [Oryza sativa (indica cultivar-group)] gi\|113611702, gi... - gi\|125600936\|gb\|EAZ40512.1\| hypothetical protein OsJ_023995 [Oryza sativa (japonica cultivar-group)]...	146.0	[0..6]	[118..223]
gi\|116196304, gi... - gi\|88180663\|gb\|EAQ88131.1\| hypothetical protein CHGG_04750 [Chaetomium globosum CBS 148.51], gi\|1161...	137.0	[0..1]	[118..4]
gi\|73997496 - gi\|73997496\|ref\|XP_853316.1\| PREDICTED: similar to UPF0198 protein CGI-141 [Canis familiaris]	132.0	[0..3]	[119..169]
gi\|38603916, gi\|... - gi\|44681404\|gb\|AAS47642.1\| At3g03180 [Arabidopsis thaliana], gi\|38603916\|gb\|AAR24703.1\| At3g03180 [A...	124.0	[0..1]	[120..4]
gi\|57118001, gi\|... - gi\|57118003\|gb\|AAW34133.1\| KISS1 isoform f [Mus musculus], gi\|57118001\|gb\|AAW34132.1\| KISS1 isoform ...	123.0	[0..3]	[110..4]
AGAP002357-PA - vesicle transport protein GOT1B\|protein_coding\|2R:20595480:20596072:1\|gene:AGAP002357 gi\|118782944, gi... - gi\|118782944\|ref\|XP_312602.3\| AGAP002357-PA [Anopheles gambiae str. PEST], gi\|116129807\|gb\|EAA08222....	122.0	[0..2]	[119..3]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLSDLQKIG VGTTALGFLF MIMGIFMFFD GPLLSLGNLL LVFGFFMIAG FSKSVSFFLR  60
   61 KDRMLGSISF FSGLLLTLFH FPIIGFFVEC LGFFNLFKVF YPLIISFLRT VPYIGPYIDR 120
  121 LTSYQQSPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.853872
Match:	PF04178.3
Description:	No description for PF04178.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits