YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC737.03c
Organism:	Schizosaccharomyces pombe
Length:	615 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC737.03c.

Description	E-value	Query Range	Subject Range
gi\|85079959 - gi\|85079959\|ref\|XP_956454.1\| hypothetical protein NCU03345 [Neurospora crassa OR74A] gi\|28881184, gi\|... - gi\|32403980\|ref\|XP_322603.1\| hypothetical protein [Neurospora crassa], gi\|28917519\|gb\|EAA27218.1\| pr...	413.0	[0..24]	[334..7]
gi\|49096824, gi\|... - gi\|67539130\|ref\|XP_663339.1\| hypothetical protein AN5735.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	409.0	[0..24]	[510..6]
gi\|114194493, gi... - gi\|115389184\|ref\|XP_001212097.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	353.0	[0..25]	[379..7]
gi\|38103453, gi\|... - gi\|39943796\|ref\|XP_361435.1\| hypothetical protein MG03909.4 [Magnaporthe grisea 70-15], gb\|EAA50150....	304.0	[0..25]	[268..8]
gi\|46109552, gi\|... - gi\|46109552\|ref\|XP_381834.1\| hypothetical protein FG01658.1 [Gibberella zeae PH-1], gi\|42545516\|gb\|E...	303.0	[0..23]	[266..6]
gi\|113197605, gi... - gi\|58197554\|ref\|NP_001010866.1\| transmembrane protein 201 isoform 2 [Homo sapiens], gi\|55962820\|emb\|...	302.0	[0..27]	[247..46]
gi\|169769683 - gi\|169769683\|ref\|XP_001819311.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767170 - gi\|83767170\|dbj\|BAE57309.1\| unnamed protein product [Aspergillus oryzae]	301.0	[0..25]	[351..7]
gi\|148682928, gi... - gi\|74148831\|dbj\|BAE32126.1\| unnamed protein product [Mus musculus], gi\|68342040\|ref\|NP_808340.2\| tra...	287.0	[0..27]	[247..46]

Back

Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSRLFTLG LGNSDDGLKS TFGDKTVTCF YCNKKKEKIR DGTSTWTCSI CEATNHIDEK  60
   61 GDILDYRPPT PTQDKGVGPF YAIRDFPSSS SFQSPFCEKC QMNQLIVNRM LADYLPDSSH 120
  121 PDYQAYEKAL PEYKKSIEEK FPIVCSECYD SVQDQLDAND YEAKNQVLGY WLQKSKEQLN 180
  181 AKVPHHYPKA SFVLWLLRGF GFSFFYLQSI VWHLYHSMII SLLPDGIRNL FLKAISYFLL 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2jm1A
Description:	No description for 2jm1A was found.

Predicted Domain #2

Region A:
Residues: [242-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSSKIFYFN WLGFFVVFWN PYWYKMMDNP SWELFGRDQY IQCQALYLII RLTCLYLLSC  60
   61 YESEILNLSS DTNLESD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [319-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLLRQIHAAF FFVTICFTWI SISCLKPSPP PEVHLTGEIL KPRKKRQEST SSVHRIGKES  60
   61 SDRKDGISGQ NKLQQFATIS ILNNTNATSH LGNQSVRERA PEESPMTFLQ KKMAALPTSS 120
  121 PVRPMLKPTL QLQNSPLSKL VPQEVGNKVN DSIHTTSNQP SKFSLNPSIS LKGDNVIEKN 180
  181 LPFSVSTLKS TAKKDTGKAG DGQNREIQNE PVSLESHFSK SLALQNDPTE VIQVKNVLHR 240
  241 NR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [561-615]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNAKLLIAFT ILFLVGLICG WRLNRFTMFI YYLCILVLAT YYVMKHNFYP LRKVA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1mv3A
Description:	NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1: ALTERNATIVE SPLICING IN MELANOMA AND INTERACTION WITH C-MYC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits